DEHA2F14718g


weakly similar to uniprot|P09032 Saccharomyces cerevisiae YOR260W GCD1 Gamma subunit of the translation initiation factor eIF2B

Genomic environment map

Element type: CDS
Element length: 1434 nucleotides,
on anti-sense strand of
Deha2F: complement(1240077..1241510).
Other names:
DEHA-CDS2507.1
DEHA-IPF7846
DEHA0F16005g
Coding sequence: 478 codons.
Database cross references:
EMBL: CR382138
GeneID: 2903699
GenomeReviews: CR382138_GR
HOGENOM: HBG397970

Computed results  

None available yet


Homologs and Orthologs

Homologs in protein family: GL3C2560
Orthologs: strict determination not possible; homologs must be refined manually

Protein DEHA2F14718p  


weakly similar to uniprot|P09032 Saccharomyces cerevisiae YOR260W GCD1 Gamma subunit of the translation initiation factor eIF2B; SubName: Full=DEHA2F14718p;

Protein domain map

Protein length: 477 amino acids
Protein family: GL3C2560
Database cross references:
InterPro: IPR001451
InterPro: IPR005835
InterPro: IPR011004
KEGG: dha:DEHA2F14718g
Pfam: PF00132
Pfam: PF00483
RefSeq: XP_461001.2
UniProtKB/TrEMBL: Q6BLC0
UniProtKB: Q6BLC0_DEBHA

Computed results for DEHA2F14718p  

None available yet

Gene Ontology terms  


Sequence data  


Nucleotide sequence    

>DEHA2F14718g.nt
ATGGAATTTCATGCAGTTATCTTGTGTGGATCGGGTAAAGCCTTGTCTCCATTTTCTCAG
GTGAGATCTACGGGGATGCCCAAGGCGCTTTTACCGATTGCGAACAGACCTATGATTGAT
TATGTATTGGAATGGTGTGAAAAGGCATTCTTTCCGAAAGTGACAGTGGTATGTGACACT
GATTCTAGCGAACAAGTGCAAAAGGCGTTAGATCAATACAATAGCGAAAAGAGTAAAAAG
GAAAAGGCTAAGGAGGATGCGGACGGCGATGATGACGACAGCTCGTTCTCACGGTCGGTG
GAGATATTGGGGCTTGACAGCAGTTCTAGTGGTGAGGTATTGTACCATTTGTATAAGACA
TCGGCGTTGAAGACGAATCCACATTTTGTGATCTTGCCGTGCGATTTCATAACCAACTTG
CCTCCACAAGTATTGATCGAGGCGTACAGAAATAGAAACGAATCGGACCTTGGGTTGATG
GTTTATTATAGAAATCAGCTTGATATAGAAGATAAGAAATCGAAGATTTTTCCTAAAAAC
TATACGATCTATTCTGACTTGCCCGACGGCCAATGTCAACTCTTGGACATCTATTCCAAG
GAGGATATTGATTTCCACAAGACGTTACAAATAAGAACCCAGATGTGTTGGAAATTTCCT
AATTCGACAATTAGTACCAAGTTATTGAATGGCTCAGTTTTCTTTGGATCAGTGGACCGT
ATATTCGCCGTGTTTGACCAGGAAGACAAATGCACAGAATCGTATTTTCACGATAGATCG
ATCACCAAGGTTATCCGTGATTTATCCAGAAGATCTTGGAAACACTCGGATCCCAAAGAT
ACTGTGGGATTTTGCATTTTACCTGATCAGGCTACTTTTTTCAGGGTTAATAATACACCA
GTATTGATGGAAGCCAACAGGCATTTTATGAAATTGCAAGCTATGGCTAAGGGTCAGCAC
CAGCAACAGACATCGCATCCTAAGGATAAAGCATCTGCTAATATTGGAATAGATTGCTCG
ATTGGAGAGAATACGTCTGTTGGAGAAAAGACAAATGTTAAAAGAACTATTGTTGGTTCT
TCTTGTAGTATTGGAAAGAGAGTTAAATTAACAGGCTGTCTCATTTTAAATAATATCACG
ATCGAAGATGACGTTCAGCTTGAAAATTGTATATTAGGAAATGGTGTTATCATACGTTCT
AAGCTGAGATTAACCAATTGTAACGTTGAATCGAGTCTCGAGGTTGCAAAGGGTACTCAT
TCAAAGGGTGATACTTTGTTATGTCTCTCTTTGGAAGGTATTGTTGAGGATGATGAAGAA
GAGTTTGCAGTTGATTCCGGTGAATCTGATTCTGACGATGAATCTGGAAGTGACTACAGC
TATGATGATTATGATGAATACGATGATAATTCAGATGGATTATTCGCTCATTGA

Coding sequence    

>DEHA2F14718g.cds
ATGGAATTTCATGCAGTTATCTTGTGTGGATCGGGTAAAGCCTTGTCTCCATTTTCTCAG
GTGAGATCTACGGGGATGCCCAAGGCGCTTTTACCGATTGCGAACAGACCTATGATTGAT
TATGTATTGGAATGGTGTGAAAAGGCATTCTTTCCGAAAGTGACAGTGGTATGTGACACT
GATTCTAGCGAACAAGTGCAAAAGGCGTTAGATCAATACAATAGCGAAAAGAGTAAAAAG
GAAAAGGCTAAGGAGGATGCGGACGGCGATGATGACGACAGCTCGTTCTCACGGTCGGTG
GAGATATTGGGGCTTGACAGCAGTTCTAGTGGTGAGGTATTGTACCATTTGTATAAGACA
TCGGCGTTGAAGACGAATCCACATTTTGTGATCTTGCCGTGCGATTTCATAACCAACTTG
CCTCCACAAGTATTGATCGAGGCGTACAGAAATAGAAACGAATCGGACCTTGGGTTGATG
GTTTATTATAGAAATCAGCTTGATATAGAAGATAAGAAATCGAAGATTTTTCCTAAAAAC
TATACGATCTATTCTGACTTGCCCGACGGCCAATGTCAACTCTTGGACATCTATTCCAAG
GAGGATATTGATTTCCACAAGACGTTACAAATAAGAACCCAGATGTGTTGGAAATTTCCT
AATTCGACAATTAGTACCAAGTTATTGAATGGCTCAGTTTTCTTTGGATCAGTGGACCGT
ATATTCGCCGTGTTTGACCAGGAAGACAAATGCACAGAATCGTATTTTCACGATAGATCG
ATCACCAAGGTTATCCGTGATTTATCCAGAAGATCTTGGAAACACTCGGATCCCAAAGAT
ACTGTGGGATTTTGCATTTTACCTGATCAGGCTACTTTTTTCAGGGTTAATAATACACCA
GTATTGATGGAAGCCAACAGGCATTTTATGAAATTGCAAGCTATGGCTAAGGGTCAGCAC
CAGCAACAGACATCGCATCCTAAGGATAAAGCATCTGCTAATATTGGAATAGATTGCTCG
ATTGGAGAGAATACGTCTGTTGGAGAAAAGACAAATGTTAAAAGAACTATTGTTGGTTCT
TCTTGTAGTATTGGAAAGAGAGTTAAATTAACAGGCTGTCTCATTTTAAATAATATCACG
ATCGAAGATGACGTTCAGCTTGAAAATTGTATATTAGGAAATGGTGTTATCATACGTTCT
AAGCTGAGATTAACCAATTGTAACGTTGAATCGAGTCTCGAGGTTGCAAAGGGTACTCAT
TCAAAGGGTGATACTTTGTTATGTCTCTCTTTGGAAGGTATTGTTGAGGATGATGAAGAA
GAGTTTGCAGTTGATTCCGGTGAATCTGATTCTGACGATGAATCTGGAAGTGACTACAGC
TATGATGATTATGATGAATACGATGATAATTCAGATGGATTATTCGCTCATTGA

Predicted translation product    

>DEHA2F14718g.aa
MEFHAVILCGSGKALSPFSQVRSTGMPKALLPIANRPMIDYVLEWCEKAFFPKVTVVCDT
DSSEQVQKALDQYNSEKSKKEKAKEDADGDDDDSSFSRSVEILGLDSSSSGEVLYHLYKT
SALKTNPHFVILPCDFITNLPPQVLIEAYRNRNESDLGLMVYYRNQLDIEDKKSKIFPKN
YTIYSDLPDGQCQLLDIYSKEDIDFHKTLQIRTQMCWKFPNSTISTKLLNGSVFFGSVDR
IFAVFDQEDKCTESYFHDRSITKVIRDLSRRSWKHSDPKDTVGFCILPDQATFFRVNNTP
VLMEANRHFMKLQAMAKGQHQQQTSHPKDKASANIGIDCSIGENTSVGEKTNVKRTIVGS
SCSIGKRVKLTGCLILNNITIEDDVQLENCILGNGVIIRSKLRLTNCNVESSLEVAKGTH
SKGDTLLCLSLEGIVEDDEEEFAVDSGESDSDDESGSDYSYDDYDEYDDNSDGLFAH*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites