HomeDEHA2E02134g
similar to uniprot|P25045 Saccharomyces cerevisiae YMR296C LCB1 Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1746 nucleotides,
on sense strand of
Deha2E: 192286..194031.
Other names:
DEHA-CDS1739.1
DEHA-IPF5612
DEHA0E02783g
Coding sequence: 582 codons.
Element length: 1746 nucleotides,
on sense strand of
Deha2E: 192286..194031.
Other names:
DEHA-CDS1739.1
DEHA-IPF5612
DEHA0E02783g
Coding sequence: 582 codons.
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.N2Orthologs: strict determination not possible; homologs must be refined manually
Protein DEHA2E02134p 
similar to uniprot|P25045 Saccharomyces cerevisiae YMR296C LCB1 Component of serine palmitoyltransferase responsible along with Lcb2p for the first committed step in sphingolipid synthesis which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>DEHA2E02134g.nt CAGATGTAAATATGCCCTTGAAGAGTTTATTATGAAGAATTCTGAGTGTTTTAACAATCT ATTATTTATCGAAAGTGACAGCTTCAAACAATTTGTCAATGCTTTACGAGACCACCCTAA TGATTCTATATAGACGTACCATATAGATATCCGTGCTTAATATGTAGATATATGTATATA TATATAGCTATACTTTCCATATAATAAGAAACTAGTGCAGGTTTAAATGTAATTATTGTG TACGCTATATGTGAAACCAAATGTGCATTTTCAATAATGTGAAGAATGAATTCAATAGGC TCAAAAAAGATGCTGAATCAAAGTTAAAAGAAGTCTCTATCCTTCGCTCCGTAGAAAATA ACATTCTATAATTAAAACATGATTGAAAGACATTTCATTGTTATCGAAATCAAAAATGTG TCATTTATTACATTTTCAAGCATATATGAAATGTATTTCAGAAGCAAATCACAAAATCTT AAGAACAAATTGAACCCACCTACAGAAAACAATGGTCGGCTCTTGAATACCATCATTCGT TCACTGCAGCCAGCGAAAGACAAATGGATGCAAACTTCAATATCTTGTACATATTAGAAA GACTAAAATATCGAATATTTTTATAGAAAGTGATAACATCATGGTTTTATCAGTACTACT ACATTAGCTGATGATCATACATAGGAATCCGTGCTTTAATACGTATATAAATATAACTAT ATCTTATACTCTCCATATAATAGGAGAGTAAGAATGCTAAGATTATGTAATCATTCCAGA TACGCGAAACGTCCAATATTCTTTTTAGTAGGTGTTGATGAGAACCAATCTCATATGAGC TTTCTATAATAGTTCATTACATTATACAATCGTTGGGTTAAAAGTAAGTTATCACGAATA TTAGTGAATAAAGATACAAACTTTCACTTTGGTTGTTGTTATATTATATTTTCGTTGTTA GGATCATTGCTATTCTCTTACTTTGTACAAGTCATCTAAAATGCCTTCGGCTGAGACTAT AGTTACCACTACCACAATCAAGACAGCAACAGCTATTACTACATTAGCCCCGTCTCTTGA GGGGTTGACAGCGGCTTTATCACACAATTTTGTCCATTATTTGAACTATTTGGATAGGTT ACCAGGTGGTCAGATTATTTTAAGGTATATTAAATCGTCGTATAAGAATGATCCAGTTAG ATCATTATTTGAGTTAGCGCTCTTCATTTTTGCCGTTCATTACTTTCTTTCGTCGAAGAA GAAGGAAAATAAATCCGACTTAACTGTATTCAGCGAAAAGGAAATTGACGCTTTATGTAA AGACTGGGAACCTGAACCTTTAGTTGAAGATCTTACACCTTTGGAAAAATGGGAATTAAA ATGTATTCCTGAAATTAAGGGACATAATGGATCGCATGTGCAGTTATTGAACGAGCCAGG CTCTCATTTGGGTAAAGTCGTCAATTTAGCATCATATGATTTTTTGAACTTAAATGAAAG CGATAACATCAAAGCAGCAGCAAAAGGATGTATCTCTGGTGCAGGTGTAGGTGCCTGTGG ACCACCAAATTTTTATGGAACACAAGATGTTCACGTCAGATTGGAAGAAGACTTATCTGA GTACTTAGGTACTGAGCAGGCTATATTGTACGGACAAGATTTCGTTACTGCCGGTTCAGT TATCCCAGCTTACTTGAAGAGAGGTGATTTATGTATTGTGGACAGTGGTGTTAATTTAGC TATACAAAAGGCTTTGATTGTTAGTCGTTGTGATCTTGAATGGTATGATCATAATGACAT GGACCATTTGGAACAAATTTTAAAAGAAATCAAGCCAGTCATAGAGAAGCAGAAGCCTAT TCGTAGAAGATTTGTTGTTACTGAGAGTTTGTTCGCAACTACTGGTGATTTAGCATTATT ACCAAGAATCGTTGAATTGAAAAACAAATATAAATATCGTTTATTCTTAGATGAATCATT GTCTATCGGTGTTTTAGGTGCTACTGGTAAGGGTCTTGTGGAACATTATAACATTCCAAG GTCAGAAATTTCTATCACCATTGGTTCCATGGCTTTATCTTTTGCATCTTCTGGTGGTTT CTGTGTTGGTGTAACTCCAATGATTCAACATCAAAGAATCTCTTCTAACGCCTACGTTTT TAGTGCAGCGTTACCCCCGTATTCGGCTAAAGTAACCTCTGAAGCTATTAAAGAAATTTC CTCGAATTTAGATTCAACCGGAAAATCCAAACTTATGCTGGCCTTACATGAAAAAATTCA GTATGTTTATCAAGAGTTAGAAAAGCAAATCCCATCGTCATTCTTTACGGTAACATCGGC TCCATTTTCTCCAATTATTCATTTAAGTTTAAGTCTGGAGTATAGAAAGAAATTGAATTT ACCTCCATTTTACGGTAATACAGATTTGTTACTCACTGGTAAACAGTCAAAGAGATTGAA TGAATTCAATCATAAGCTTAACACGGAATCGTTTATACTACAAAAGATTATTGATCAGTG CTTAACGAAGGCTGGTGTTTTGTTGACTAGATCCAAGCATATTTTAGAACATGAGAACTT ACCTGTTCCAAGCCCGCATCTACTTTTCATGGTTAATACAGGGGTCTCGATTGAAGAATT TAATAGAGCTATCTACGCTTTGAAACTTGCCATGGGTGAAGTTTGCTCTAAGATCCGTAA CGAAAATGATTTGCTTGTCTTAGAAAATGAGATCATAAATTATTGATTCTATGGCATCCT ATTAAAATATATATATTCTTTGTTTTCAATTTTTTGAAAATGTGTCTTAATAATTTATCT CGCGACACCTGTTCAAAATCTTATTTATTGGTACACCATTATAATAATTACGTATATTCT GTTTATTTCAGCATTCTATTCCGCGATTCCCTTGCAATAGACCTAGCCTCTTCAACGTCA TGTGCATTACTATGATTTAAATCTTTTGCTAGCTCGTATGCTTCTTCAAATCTATGGTTT TCGAGGGCACTTCTTGCCAACCATAATCTTGCTTTAGATGTTTCAT
>DEHA2E02134g.cds ATGCCTTCGGCTGAGACTATAGTTACCACTACCACAATCAAGACAGCAACAGCTATTACT ACATTAGCCCCGTCTCTTGAGGGGTTGACAGCGGCTTTATCACACAATTTTGTCCATTAT TTGAACTATTTGGATAGGTTACCAGGTGGTCAGATTATTTTAAGGTATATTAAATCGTCG TATAAGAATGATCCAGTTAGATCATTATTTGAGTTAGCGCTCTTCATTTTTGCCGTTCAT TACTTTCTTTCGTCGAAGAAGAAGGAAAATAAATCCGACTTAACTGTATTCAGCGAAAAG GAAATTGACGCTTTATGTAAAGACTGGGAACCTGAACCTTTAGTTGAAGATCTTACACCT TTGGAAAAATGGGAATTAAAATGTATTCCTGAAATTAAGGGACATAATGGATCGCATGTG CAGTTATTGAACGAGCCAGGCTCTCATTTGGGTAAAGTCGTCAATTTAGCATCATATGAT TTTTTGAACTTAAATGAAAGCGATAACATCAAAGCAGCAGCAAAAGGATGTATCTCTGGT GCAGGTGTAGGTGCCTGTGGACCACCAAATTTTTATGGAACACAAGATGTTCACGTCAGA TTGGAAGAAGACTTATCTGAGTACTTAGGTACTGAGCAGGCTATATTGTACGGACAAGAT TTCGTTACTGCCGGTTCAGTTATCCCAGCTTACTTGAAGAGAGGTGATTTATGTATTGTG GACAGTGGTGTTAATTTAGCTATACAAAAGGCTTTGATTGTTAGTCGTTGTGATCTTGAA TGGTATGATCATAATGACATGGACCATTTGGAACAAATTTTAAAAGAAATCAAGCCAGTC ATAGAGAAGCAGAAGCCTATTCGTAGAAGATTTGTTGTTACTGAGAGTTTGTTCGCAACT ACTGGTGATTTAGCATTATTACCAAGAATCGTTGAATTGAAAAACAAATATAAATATCGT TTATTCTTAGATGAATCATTGTCTATCGGTGTTTTAGGTGCTACTGGTAAGGGTCTTGTG GAACATTATAACATTCCAAGGTCAGAAATTTCTATCACCATTGGTTCCATGGCTTTATCT TTTGCATCTTCTGGTGGTTTCTGTGTTGGTGTAACTCCAATGATTCAACATCAAAGAATC TCTTCTAACGCCTACGTTTTTAGTGCAGCGTTACCCCCGTATTCGGCTAAAGTAACCTCT GAAGCTATTAAAGAAATTTCCTCGAATTTAGATTCAACCGGAAAATCCAAACTTATGCTG GCCTTACATGAAAAAATTCAGTATGTTTATCAAGAGTTAGAAAAGCAAATCCCATCGTCA TTCTTTACGGTAACATCGGCTCCATTTTCTCCAATTATTCATTTAAGTTTAAGTCTGGAG TATAGAAAGAAATTGAATTTACCTCCATTTTACGGTAATACAGATTTGTTACTCACTGGT AAACAGTCAAAGAGATTGAATGAATTCAATCATAAGCTTAACACGGAATCGTTTATACTA CAAAAGATTATTGATCAGTGCTTAACGAAGGCTGGTGTTTTGTTGACTAGATCCAAGCAT ATTTTAGAACATGAGAACTTACCTGTTCCAAGCCCGCATCTACTTTTCATGGTTAATACA GGGGTCTCGATTGAAGAATTTAATAGAGCTATCTACGCTTTGAAACTTGCCATGGGTGAA GTTTGCTCTAAGATCCGTAACGAAAATGATTTGCTTGTCTTAGAAAATGAGATCATAAAT TATTGA
>DEHA2E02134g.aa MPSAETIVTTTTIKTATAITTLAPSLEGLTAALSHNFVHYLNYLDRLPGGQIILRYIKSS YKNDPVRSLFELALFIFAVHYFLSSKKKENKSDLTVFSEKEIDALCKDWEPEPLVEDLTP LEKWELKCIPEIKGHNGSHVQLLNEPGSHLGKVVNLASYDFLNLNESDNIKAAAKGCISG AGVGACGPPNFYGTQDVHVRLEEDLSEYLGTEQAILYGQDFVTAGSVIPAYLKRGDLCIV DSGVNLAIQKALIVSRCDLEWYDHNDMDHLEQILKEIKPVIEKQKPIRRRFVVTESLFAT TGDLALLPRIVELKNKYKYRLFLDESLSIGVLGATGKGLVEHYNIPRSEISITIGSMALS FASSGGFCVGVTPMIQHQRISSNAYVFSAALPPYSAKVTSEAIKEISSNLDSTGKSKLML ALHEKIQYVYQELEKQIPSSFFTVTSAPFSPIIHLSLSLEYRKKLNLPPFYGNTDLLLTG KQSKRLNEFNHKLNTESFILQKIIDQCLTKAGVLLTRSKHILEHENLPVPSPHLLFMVNT GVSIEEFNRAIYALKLAMGEVCSKIRNENDLLVLENEIINY*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/DEHA/DEHA2E02134p