DEHA2C16852g

similar to uniprot|P40495 Saccharomyces cerevisiae YIL094c LYS12 homo-isocitrate dehydrogenase

Genomic environment map

Element type: CDS
Element length: 1125 nucleotides,
on sense strand of
Deha2C: 1483222..1484346.
Other names:
DEHA-CDS3360.1
DEHA-IPF3292
DEHA0C18106g
Coding sequence: 375 codons.

Database cross references:
EMBL: CR382135
GeneID: 2900138
GenomeReviews: CR382135_GR
HOGENOM: HBG518924

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0069
Consensus family of 44 members, sczltkgdpy (4 4 4 4 4 4 4 4 8 4)
44-member family, phyletic pattern sczltkgdpy, profile (4 4 4 4 4 4 4 4 8 4)
Proteins: YALI0E05137p YALI0D10593p YALI0D06303p YALI0C00407p PISO0L22253p PISO0K22252p PISO0H11799p PISO0G11798p PISO0F09465p PISO0E08122p PISO0D08737p PISO0C08670p DEHA2G10978p DEHA2G05786p DEHA2C16852p DEHA2C10758p ERGO0F08822p ERGO0D04334p ERGO0D04114p ERGO0A04114p KLLA0F04103p KLLA0E08339p KLLA0E03125p KLLA0D04906p KLTH0H12188p KLTH0G10384p KLTH0G10186p KLTH0F15048p SAKL0G03520p SAKL0E07876p SAKL0E07656p SAKL0D08690p ZYRO0E04796p ZYRO0D11220p ZYRO0D02838p ZYRO0A01914p CAGL0I07227p CAGL0H03795p CAGL0G02673p CAGL0G02585p SACE0O06864p SACE0N06446p SACE0I01870p SACE0C01144p
Search in: Génolevures Google

Homologs in protein family: GL3C0069
Orthologs: strict determination not possible; homologs must be refined manually

Protein DEHA2C16852p

similar to uniprot|P40495 Saccharomyces cerevisiae YIL094c LYS12 homo-isocitrate dehydrogenase; SubName: Full=DEHA2C16852p;

Protein domain map

Protein length: 374 amino acids
Protein family: GL3C0069

Database cross references:
Gene3D: G3DSA:3.40.718.10
InterPro: IPR001804
InterPro: IPR019818
InterPro: IPR024084
KEGG: dha:DEHA2C16852g
PANTHER: PTHR11835
PROSITE: PS00470
Pfam: PF00180
RefSeq: XP_458421.1
UniProtKB/TrEMBL: Q6BTP8
UniProtKB: Q6BTP8_DEBHA

Phylogeny

PhylomeDB:DEHA2C16852g

Computed results for DEHA2C16852p

None available yet

Gene Ontology terms

Sequence data

>DEHA2C16852g.nt
ATGTCCTCAATTATCCGTCGTACTTTCTCTACTTCTACCGCTGCTTTGAAATCCTTAAAA
ATTGGTTTAATTGCCGGTGATGGTATTGGTCGTGAAGTTATGCCAGCTGGTCAAGCTGTT
TTGGAAAACTTACCATCTAAGCACGATTTACAATTTGAATTTGTTAACTTAGACGCTGGT
TTTGAGTACTTCCAAAAGAACGGTACTGCCTTACCTCAAGAAACTGTTGACATTTTGCAA
AAGGAATGTGACGGTGCTTTGTTCGGTGCAGTATCTTCCCCAACAACCAAGGTGGAAGGC
TATTCTTCCCCAATTGTTGCCTTGAGAAAGAAGATGGGTTTATACGCTAACGTCCGTCCA
GTTAAGTCTGTTGAAGGTAACGCTAGATCAGTCGATATGGTTATTGTCCGTGAAAACACC
GAAGACTTATATATCAAGGAAGAAAAGTCGTACACTAAGGAAGATGGTACCAGGGTTGCC
GAAGCCATCAAGAGAATCACTGAAACTGCCACCTCAAGAATTGCTAAGATGGCTTACGAC
ATTGCATTGCAAAGACAAGCTATTAGAAAAGCAAACCCTGGCTTAAAATCCTTACACGAA
AAGCCTTCGGTCACCGTTACCCACAAATCTAATGTCTTATCTCAATCTGATGGTTTATTC
CGTGAAGTATGTCGTCAAGTTTACGATGAAAATGCTGATAAGTACAAGGATATTGCTCAC
AAGGAACAAATTGTTGATTCCATGGTCTACCGTATGTTCAGAGAACCAGAAATATTTGAT
GTTGTTGTTGCTCCAAACTTGTATGGTGACATTTTAAGTGATGGTGCTGCCGCTTTAGTT
GGTTCTTTAGGTGTCGTTCCATCTGCCAACGTCGGTGACAACTTCGCTATTGGTGAACCA
TGCCATGGTTCTGCTCCAGATATCCAAGGTAAGGGTATTTCTAACCCAATTGCTACCATC
AGATCTACTGCTTTGATGTTAGAATTTATGGGCTACCCTGAACCAGCTGCTGATATCTAC
GCTGCCGTTGATGCTAACTTGACTGAAGATAAGATTAAGACTCCAGACTTAGGTGGTTCT
TCTAGTACTCAAGAAGTTATCGACGATATTATCAGACGTTTTTAA

>DEHA2C16852g.cds
ATGTCCTCAATTATCCGTCGTACTTTCTCTACTTCTACCGCTGCTTTGAAATCCTTAAAA
ATTGGTTTAATTGCCGGTGATGGTATTGGTCGTGAAGTTATGCCAGCTGGTCAAGCTGTT
TTGGAAAACTTACCATCTAAGCACGATTTACAATTTGAATTTGTTAACTTAGACGCTGGT
TTTGAGTACTTCCAAAAGAACGGTACTGCCTTACCTCAAGAAACTGTTGACATTTTGCAA
AAGGAATGTGACGGTGCTTTGTTCGGTGCAGTATCTTCCCCAACAACCAAGGTGGAAGGC
TATTCTTCCCCAATTGTTGCCTTGAGAAAGAAGATGGGTTTATACGCTAACGTCCGTCCA
GTTAAGTCTGTTGAAGGTAACGCTAGATCAGTCGATATGGTTATTGTCCGTGAAAACACC
GAAGACTTATATATCAAGGAAGAAAAGTCGTACACTAAGGAAGATGGTACCAGGGTTGCC
GAAGCCATCAAGAGAATCACTGAAACTGCCACCTCAAGAATTGCTAAGATGGCTTACGAC
ATTGCATTGCAAAGACAAGCTATTAGAAAAGCAAACCCTGGCTTAAAATCCTTACACGAA
AAGCCTTCGGTCACCGTTACCCACAAATCTAATGTCTTATCTCAATCTGATGGTTTATTC
CGTGAAGTATGTCGTCAAGTTTACGATGAAAATGCTGATAAGTACAAGGATATTGCTCAC
AAGGAACAAATTGTTGATTCCATGGTCTACCGTATGTTCAGAGAACCAGAAATATTTGAT
GTTGTTGTTGCTCCAAACTTGTATGGTGACATTTTAAGTGATGGTGCTGCCGCTTTAGTT
GGTTCTTTAGGTGTCGTTCCATCTGCCAACGTCGGTGACAACTTCGCTATTGGTGAACCA
TGCCATGGTTCTGCTCCAGATATCCAAGGTAAGGGTATTTCTAACCCAATTGCTACCATC
AGATCTACTGCTTTGATGTTAGAATTTATGGGCTACCCTGAACCAGCTGCTGATATCTAC
GCTGCCGTTGATGCTAACTTGACTGAAGATAAGATTAAGACTCCAGACTTAGGTGGTTCT
TCTAGTACTCAAGAAGTTATCGACGATATTATCAGACGTTTTTAA

>DEHA2C16852g.aa
MSSIIRRTFSTSTAALKSLKIGLIAGDGIGREVMPAGQAVLENLPSKHDLQFEFVNLDAG
FEYFQKNGTALPQETVDILQKECDGALFGAVSSPTTKVEGYSSPIVALRKKMGLYANVRP
VKSVEGNARSVDMVIVRENTEDLYIKEEKSYTKEDGTRVAEAIKRITETATSRIAKMAYD
IALQRQAIRKANPGLKSLHEKPSVTVTHKSNVLSQSDGLFREVCRQVYDENADKYKDIAH
KEQIVDSMVYRMFREPEIFDVVVAPNLYGDILSDGAAALVGSLGVVPSANVGDNFAIGEP
CHGSAPDIQGKGISNPIATIRSTALMLEFMGYPEPAADIYAAVDANLTEDKIKTPDLGGS
SSTQEVIDDIIRRF*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

DEHA2C16852g

DEHA2C16852g

Genomic environment map

Computed results

Homologs and Orthologs

Protein DEHA2C16852p

Protein domain map

Phylogeny

Computed results for DEHA2C16852p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes