DEHA2B11572p_blastp.html 
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= DEHA2B11572p (infer) YOL093W TRM10 tRNA methyltransferase :
similar to uniprot|Q12400 Saccharomyces cerevisiae [Debaryomyces
hansenii CBS767]
         (389 letters)

Database: Genolevures3.aa 
           48,939 sequences; 23,992,848 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

|DEHA2B11572p (infer) YOL093W TRM10 tRNA methyltransferase : simi...   803   0.0  
|SAKL0C09834p (infer) YOL093W : similar to uniprot|Q12400 Sacchar...   248   1e-65
|CAGL0I07667p (infer) YOL093w : similar to uniprot|Q12400 Sacchar...   241   2e-63
|SACE0O01716p tRNA methyltransferase, methylates the N-1 position...   240   3e-63
|KLTH0C09922p (infer) YOL093W : similar to uniprot|Q12400 Sacchar...   238   9e-63
|KLLA0C03740p (infer) YOL093W : similar to uniprot|Q12400 Sacchar...   234   1e-61
|ZYRO0B06226p (infer) YOL093W : similar to uniprot|Q12400 Sacchar...   234   1e-61
|ERGO0D11880p Syntenic homolog of Saccharomyces cerevisiae YOL093...   228   1e-59
|YALI0F12771p some similarities with uniprot|Q12400 Saccharomyces...   206   4e-53


>|DEHA2B11572p (infer) YOL093W TRM10 tRNA methyltransferase : similar to
           uniprot|Q12400 Saccharomyces cerevisiae [Debaryomyces
           hansenii CBS767]
          Length = 389

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MNYNVDAIDSQMADNNVDIVQADAIISKEMENQDTEQSQKRSGSEVEKDDFKRQKVVVPE 60
           MNYNVDAIDSQMADNNVDIVQADAIISKEMENQDTEQSQKRSGSEVEKDDFKRQKVVVPE
Sbjct: 1   MNYNVDAIDSQMADNNVDIVQADAIISKEMENQDTEQSQKRSGSEVEKDDFKRQKVVVPE 60

Query: 61  GMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYNYHQ 120
           GMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYNYHQ
Sbjct: 61  GMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYNYHQ 120

Query: 121 MKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLDITS 180
           MKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLDITS
Sbjct: 121 MKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLDITS 180

Query: 181 FNKNLKKRFEKAIPQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEVIDTLE 240
           FNKNLKKRFEKAIPQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEVIDTLE
Sbjct: 181 FNKNLKKRFEKAIPQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEVIDTLE 240

Query: 241 PHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFELCCKW 300
           PHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFELCCKW
Sbjct: 241 PHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFELCCKW 300

Query: 301 FENDKDWGKAFNEVLPPRKVKGKLTHGSDPEKSIEPSEVSEQPVSSEQSEQPVLSEQPVS 360
           FENDKDWGKAFNEVLPPRKVKGKLTHGSDPEKSIEPSEVSEQPVSSEQSEQPVLSEQPVS
Sbjct: 301 FENDKDWGKAFNEVLPPRKVKGKLTHGSDPEKSIEPSEVSEQPVSSEQSEQPVLSEQPVS 360

Query: 361 SEQPVLSEQPVLSESSDEPSDEPSKGADH 389
           SEQPVLSEQPVLSESSDEPSDEPSKGADH
Sbjct: 361 SEQPVLSEQPVLSESSDEPSDEPSKGADH 389


>|SAKL0C09834p (infer) YOL093W : similar to uniprot|Q12400 Saccharomyces
           cerevisiae [Lachancea kluyveri]
          Length = 303

 Score =  248 bits (632), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/297 (45%), Positives = 193/297 (64%), Gaps = 21/297 (7%)

Query: 28  KEMENQDTEQSQKRSGSEVEKDDFKRQKVV--VPEGMTKREYKRQLKQQRWEETKDEYKQ 85
           + +E+ DT  S    G  V + + +RQ  +  VPEGM+K ++K+  ++QR+EETK ++  
Sbjct: 4   RRIESTDTSTSM---GEPVAEKEVQRQPPLPPVPEGMSKSQWKKLCRKQRFEETKAQFAA 60

Query: 86  KKREKKKAARERRKERIKEAEANGETNEELYNYHQMKRAKVAPQEQIDTDVKIIMDCEFD 145
            ++EK+K ARE ++ +I+E    GE   E     ++KR     QEQ D+ V I+MDC FD
Sbjct: 61  IRKEKRKKARENKRSKIQEFLDRGEEVPE-----ELKRKPRVNQEQRDSGVSIVMDCAFD 115

Query: 146 SLMNDKEIVSLSNQITRSYSAKKHSTYDVQLDITSFNKNLKKRFEKAIPQ--YDKWTNVT 203
            LMNDKEIVS+S QITR+YS  K   +  ++ + SF K LK RF+  +    Y +W N  
Sbjct: 116 DLMNDKEIVSMSTQITRAYSCNKRERHYAKIKVASFGKRLKARFDNGLSNCGYQQWKNFE 175

Query: 204 FVENDKLEDILPMDDKQALSKYVYLTADTDEVIDTLEPHHTYIIGGIVDKNRYKNLCLNK 263
           F      E+  P D    +SK VYLTADTDE +++LEP  TYI+GGIVDKNR+K LC NK
Sbjct: 176 FTA----EEGFPED----MSKVVYLTADTDEKLESLEPGMTYIVGGIVDKNRHKCLCYNK 227

Query: 264 AQSLGLKIGRLPIDKFIKMNGRQVLATSHVFELCCKWFENDKDWGKAFNEVLPPRKV 320
           A+ LG+   RLPID++IK++GR+VL T+HV +L  K+F+N +DW +AF  VLP RK+
Sbjct: 228 AKELGIPTRRLPIDEYIKLSGRKVLTTTHVIQLMLKYFDN-RDWKEAFESVLPQRKL 283


>|CAGL0I07667p (infer) YOL093w : similar to uniprot|Q12400 Saccharomyces
           cerevisiae [Candida glabrata CBS 138]
          Length = 287

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 184/265 (69%), Gaps = 14/265 (5%)

Query: 58  VPEGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYN 117
           VPEGM+K ++K+Q ++Q +E  K+EY + ++EK+K A+E R+++I+E    GE       
Sbjct: 18  VPEGMSKSQWKKQWRRQMYEAKKEEYAEVRKEKRKRAKENRRKKIQEYIDRGEEVP---- 73

Query: 118 YHQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLD 177
             ++KR     ++Q+ + + II+DC FD LMNDKEIVS SNQITR+YSA + ++    + 
Sbjct: 74  -AELKREPRVNRDQVASGINIILDCAFDDLMNDKEIVSTSNQITRAYSANRRASQYANIT 132

Query: 178 ITSFNKNLKKRFEKAI--PQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEV 235
           +TSFNK LK+RF+KA+    Y +W N  FV ++KL   +   DK   SK VYLTADT+E 
Sbjct: 133 VTSFNKRLKERFDKALDDCNYPQWQNFKFVSDEKL---ITEGDK---SKMVYLTADTEEQ 186

Query: 236 IDTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFE 295
           +DTLEP  TYI+GGIVDKNR+K LC NKA+ LG+   RLPI ++IK+ GR+VL T+HV +
Sbjct: 187 LDTLEPGMTYIVGGIVDKNRHKLLCYNKAKELGIPTRRLPIGEYIKIEGRKVLTTTHVIQ 246

Query: 296 LCCKWFENDKDWGKAFNEVLPPRKV 320
           L  K+ E+ +DW ++F  V+P RK+
Sbjct: 247 LMLKYCES-RDWKESFESVIPSRKL 270


>|SACE0O01716p tRNA methyltransferase, methylates the N-1 position of guanosine in
           tRNAs [Saccharomyces cerevisiae]
          Length = 293

 Score =  240 bits (612), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/273 (45%), Positives = 177/273 (64%), Gaps = 11/273 (4%)

Query: 58  VPEGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYN 117
           VPEGM+K+++K+  K+QRWEE K +Y  ++R KKK  R  R  +I+E    GE   +   
Sbjct: 22  VPEGMSKKQWKKMCKRQRWEENKAKYNAERRVKKKRLRHERSAKIQEYIDRGEEVPQ--- 78

Query: 118 YHQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLD 177
             ++ R       Q D+ ++II+DC FD LMNDKEIVSLSNQ+TR+YSA + + +  ++ 
Sbjct: 79  --ELIREPRINVNQTDSGIEIILDCSFDELMNDKEIVSLSNQVTRAYSANRRANHFAEIK 136

Query: 178 ITSFNKNLKKRFEKAI--PQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEV 235
           +  F+K LK+RFE  +    Y+ W +  F+ +DK   I+  D+  +  K VYLTADT+E 
Sbjct: 137 VAPFDKRLKQRFETTLKNTNYENWNHFKFLPDDK---IMFGDEHISKDKIVYLTADTEEK 193

Query: 236 IDTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFE 295
           ++ LEP   YI+GGIVDKNRYK LCL KAQ +G+   RLPID++I + GR+VL T+HV +
Sbjct: 194 LEKLEPGMRYIVGGIVDKNRYKELCLKKAQKMGIPTRRLPIDEYINLEGRRVLTTTHVVQ 253

Query: 296 LCCKWFENDKDWGKAFNEVLPPRKVKGKLTHGS 328
           L  K+F+ D +W  AF  VLPPRK+  +    S
Sbjct: 254 LMLKYFD-DHNWKNAFESVLPPRKLDAEAKSAS 285


>|KLTH0C09922p (infer) YOL093W : similar to uniprot|Q12400 Saccharomyces
           cerevisiae [Kluyveromyces thermotolerans]
          Length = 302

 Score =  238 bits (607), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 129/297 (43%), Positives = 187/297 (62%), Gaps = 18/297 (6%)

Query: 58  VPEGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYN 117
           VPEGM+K ++K+  K++R+EETKDE+ + +REK++ A+E R+ +I+E    GE   E   
Sbjct: 20  VPEGMSKSQWKKVWKKKRFEETKDEFAKIRREKRQKAKETRRAKIQEYLDRGEEVPE--- 76

Query: 118 YHQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLD 177
              ++R     Q+Q D+ + II+DC FD LMNDKE+VSLS QITR+YS  K   +  ++ 
Sbjct: 77  --DLRRKPRKNQDQKDSGINIILDCAFDDLMNDKEVVSLSTQITRAYSHNKRENHFAKVK 134

Query: 178 ITSFNKNLKKRFEKAI--PQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEV 235
           +TSFNK L+ RFE+ +    +D+W N  F E+      LP ++       VYLTADTDE 
Sbjct: 135 VTSFNKRLRTRFEEGLKDAHHDEWKNFEFTEDP----TLPTENS------VYLTADTDET 184

Query: 236 IDTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFE 295
           ++ LEP   YI+GGIVDKNR+K LC NKA+ LG+   +LP+ +FIK+ GR+VL  +HV  
Sbjct: 185 LEKLEPGTNYIVGGIVDKNRHKLLCYNKARELGIPTKKLPLAEFIKLTGREVLTCTHVIH 244

Query: 296 LCCKWFENDKDWGKAFNEVLPPRKVKGKLTHGSDPEKSIEPSEVSEQPVSSEQSEQP 352
           L  ++F+N  DW +AF  VLP RK++          K+  P   S +P S+   E+P
Sbjct: 245 LMLRYFDN-LDWKEAFETVLPQRKLEEAEAAAEAAAKAQSPQAESSEPSSATSEEEP 300


>|KLLA0C03740p (infer) YOL093W : similar to uniprot|Q12400 Saccharomyces
           cerevisiae [Kluyveromyces lactis NRRL Y-1140]
          Length = 298

 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/264 (46%), Positives = 174/264 (65%), Gaps = 18/264 (6%)

Query: 59  PEGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGETNEELYNY 118
           PEG++K ++K+  +++R+EET+ EY Q ++EK+  A+  R+E++KE    GE   E    
Sbjct: 36  PEGISKSQWKKICRKKRFEETRAEYAQIRKEKRNRAKLARREKLKEYTDRGEEIPE---- 91

Query: 119 HQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQLDI 178
            ++KR       Q D+ + II+DC FD LMND+EIVSLS Q+TR+YS+ K      ++ +
Sbjct: 92  -ELKRPPKVNLNQSDSGISIILDCSFDDLMNDREIVSLSTQVTRAYSSNKRENNYAKIKV 150

Query: 179 TSFNKNLKKRFEKAIPQ--YDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTDEVI 236
           TSF+K LK+RF+  +    Y KW N  F      +  LP ++       VYLTADT+E +
Sbjct: 151 TSFDKRLKQRFDNDLSNSNYTKWKNFEFTA----DPTLPTENA------VYLTADTEEKL 200

Query: 237 DTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHVFEL 296
           DTLEP  TYI+GGIVDKNR+KNLC NKA+ L +   RLPI +FI + GR+VL TSH+ +L
Sbjct: 201 DTLEPGTTYIVGGIVDKNRHKNLCYNKAKELNIPTKRLPIGEFINLAGRKVLTTSHMVQL 260

Query: 297 CCKWFENDKDWGKAFNEVLPPRKV 320
             ++F+N KDW +AF  VLPPRK+
Sbjct: 261 MLRYFDN-KDWKEAFESVLPPRKL 283


>|ZYRO0B06226p (infer) YOL093W : similar to uniprot|Q12400 Saccharomyces
           cerevisiae [Zygosaccharomyces rouxii]
          Length = 296

 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/277 (47%), Positives = 188/277 (67%), Gaps = 15/277 (5%)

Query: 49  DDFKRQKVVVP---EGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEA 105
           +D+KR+   +P   EGM+K ++K+  K+QR+   K+EY Q ++EK+K ARE R+ RI+E 
Sbjct: 4   EDYKRKMTTLPPTPEGMSKSKWKKVWKKQRYNIMKEEYAQIRKEKRKRARENRRARIQEY 63

Query: 106 EANGETNEELYNYHQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYS 165
              GE   +     ++KR       Q D+ V I++DC FD LMND+EIVS+SNQITR+YS
Sbjct: 64  IDRGEEIPK-----ELKRQPRENPNQKDSGVNIVLDCGFDDLMNDREIVSMSNQITRAYS 118

Query: 166 AKKHSTYDVQLDITSFNKNLKKRFEKAIP--QYDKWTNVTFVENDKLEDILPMDDKQALS 223
           + +   +   + +TSF K LK RF++ +    Y++W N  F E+D+L  + P  DK   +
Sbjct: 119 SNRRENHFTHMKVTSFGKRLKNRFDEEMKGCHYEQWKNFEFHEDDQL-IMGPDVDK---T 174

Query: 224 KYVYLTADTDEVIDTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMN 283
           K VYLTADTD+ ++TLEP  TYI+GGIVDKNR+K LC NKA+ +G+   RLPID+FI ++
Sbjct: 175 KLVYLTADTDDKLETLEPGMTYIVGGIVDKNRHKALCYNKAKEMGVPAKRLPIDEFINIS 234

Query: 284 GRQVLATSHVFELCCKWFENDKDWGKAFNEVLPPRKV 320
           GR+VL T+HV +L  K+F+N  DW +AF  VLPPRK+
Sbjct: 235 GRKVLTTTHVVQLMLKYFDN-HDWKEAFEYVLPPRKL 270


>|ERGO0D11880p Syntenic homolog of Saccharomyces cerevisiae YOL093W [Eremothecium
           gossypii]
          Length = 296

 Score =  228 bits (581), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/285 (45%), Positives = 184/285 (64%), Gaps = 22/285 (7%)

Query: 58  VPEGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEA--EANGETNEEL 115
           VPEGM+K ++K+Q K++++E  K  Y + ++EKK+ ARE+R+ER+++A  E  GE  EEL
Sbjct: 23  VPEGMSKSQWKKQWKKEQFELNKPLYAKIRKEKKQKAREQRRERLQKALEENGGEIPEEL 82

Query: 116 YNYHQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHSTYDVQ 175
                 +R       Q D+ +K+I+DC FD LMN+KEIVSLS QITR+YSA K   +   
Sbjct: 83  ------RRTPRVNVNQKDSGIKVIIDCAFDELMNEKEIVSLSTQITRAYSANKRENHFAD 136

Query: 176 LDITSFNKNLKKRFEKAI--PQYDKWTNVTFVENDKLEDILPMDDKQALSKYVYLTADTD 233
           + +TSFNK LK+RF+  +    YD W +  F +    E  LP  +       VYLTADTD
Sbjct: 137 VKVTSFNKRLKERFDCGLKGANYDAWKHFEFTD----ESALPTTNA------VYLTADTD 186

Query: 234 EVIDTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLATSHV 293
           E ++TLEP  TYI+GGIVDKNR+K LC NKA+ LG+   RLPI ++IK+ GR+VL T+HV
Sbjct: 187 ETLETLEPGTTYIVGGIVDKNRHKALCYNKAKELGIPTRRLPIGEYIKLCGRKVLTTTHV 246

Query: 294 FELCCKWFENDKDWGKAFNEVLPPRKVKGKLTHGSDPEKSIEPSE 338
            ++  ++F+N  DW +AF  VLP RK+     H  +   S  P+E
Sbjct: 247 IQIMLRYFDN-HDWKEAFESVLPARKLAELADHAQESNSS-SPAE 289


>|YALI0F12771p some similarities with uniprot|Q12400 Saccharomyces cerevisiae
           Chromosome XV reading frame ORF YOL093W [Yarrowia
           lipolytica CLIB122]
          Length = 371

 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/271 (46%), Positives = 169/271 (62%), Gaps = 18/271 (6%)

Query: 51  FKRQKVVVPEGMTKREYKRQLKQQRWEETKDEYKQKKREKKKAARERRKERIKEAEANGE 110
           +  +  V+PEGM+K E+K+  K+  WE  KDE    K+EKKKAAR+R++  I   E    
Sbjct: 45  YNTKTAVIPEGMSKNEWKKAQKKAIWESKKDEIAAVKKEKKKAARKRKQLAISRGEIPAP 104

Query: 111 TNEELYNYHQMKRAKVAPQEQIDTDVKIIMDCEFDSLMNDKEIVSLSNQITRSYSAKKHS 170
             ++          +  PQ Q+   + I++DC FD +M  KE VSLS Q+ R YSA + +
Sbjct: 105 IPQD----------ERPPQTQLP--ISIVLDCGFDEMMTQKEKVSLSAQVGRCYSANRKA 152

Query: 171 TYDVQLDITSFNKNLKKRFEKAIPQ-YDKWTNVTFVENDKLEDILPMDDKQALSKYVYLT 229
                L + SFNK LK RF   + + ++ WTN+ FVE+D     +P +D+ A SK VYL+
Sbjct: 153 DARFDLTVNSFNKGLKDRFNNEMNKVHELWTNIKFVEDDY---TVP-EDETAKSKLVYLS 208

Query: 230 ADTDEVIDTLEPHHTYIIGGIVDKNRYKNLCLNKAQSLGLKIGRLPIDKFIKMNGRQVLA 289
           +D+D VI+ LE   TYIIGGIVDK RYKNLC +KA   GL+ GRLPI  FIK++GR+VL 
Sbjct: 209 SDSDNVINELEDGKTYIIGGIVDKGRYKNLCQDKASKQGLQTGRLPIADFIKLSGRKVLT 268

Query: 290 TSHVFELCCKWFENDKDWGKAFNEVLPPRKV 320
           T+HVFE+  KW E  KDW  AF  VLP RK+
Sbjct: 269 TNHVFEILLKWTEL-KDWKAAFEAVLPMRKL 298



BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.