HomeDEHA2B11308g
similar to uniprot|Q5ZB85 Oryza sativa B1097D05 Peptidyl prolyl cis trans isomerase-like
Element type: CDS
Element length: 984 nucleotides,
on sense strand of
Deha2B: 884597..885580.
Other names:
DEHA-CDS3941.1
DEHA-IPF10033
DEHA0B11506g
Coding sequence: 328 codons.
Element length: 984 nucleotides,
on sense strand of
Deha2B: 884597..885580.
Other names:
DEHA-CDS3941.1
DEHA-IPF10033
DEHA0B11506g
Coding sequence: 328 codons.
Homologs and Orthologs
Homologs in protein families: GL3R3437 GL3R3437.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein DEHA2B11308p 
Protein domain map
Gene Ontology terms
None available yet
Sequence data
>DEHA2B11308g.nt TTTCAATTAATTTTGCTGCCACAATGCAAGCCTTCTTCTTCAAATAAAGGTTATTAGTCG TGATAATCTTGTCAACATTAGTGTACAAATCTCGTGCTAATTCCGGAGAAGCGATATTAC CTAAACAGCATAAGGCTAATCCCACAATGAATGCATTAGGGTGTTGCATGTCGTTATCCA ACGAGTTAGTCAACAATGTTAAAACTTCTTGGTTCTCATCTAGTAACAACATGGTAGCCA TATATCCCAACCTTTTATCAGCAAAACGTGGCGATGCTAGTAATTTAATACATTCAACCT GTCCAAAATGTGTCTTTTCACCCATAATGTATAAGTATAATAACTTGGAAATATTGATTC TTCTGGTAGTCTGATCTAATTTAGCATCTCTAAATGATGTTCTAATAGATGCCGATTCCT TCATAACCACCGCCCGTTCATCGGCAATCGTCTTGGACTTTCTGACCGCTTTGATAAACG ATTTCAATGAACCCATTATAAGAAATTTCTGTCAGTTAGCCTTCGTGATGTTTCCTATAG TACTAATGTTTATTTTGAAGACTACGTGTTGAAGTGCCTAATCATATTCTGGTATATACA CGACCACCATTTCACCTTACTAAATATGGCCGATATATACAATTGTTGTCCATTCAATAA TCATCTTCTATTTAGAGATGGTAGAGGGGGCTCAAGAGTTGGGAGAGAGAGAGAGAGAGA GAGCTGGTTTCCGGAAAAAAAAAACCAAGACTGAAAATAGTAGTTAGAAATTGGGGGAAA TTGAGGTGCATGAAGAATGTACGATTATGGATTAATATAACTCCCTTCTGTATCATTAAC ATCTTAATTGGTTGCTAGTGATAATGTAGTCATTATATATTGCCCAAGATGATAATAATC GTAGATATTGGATCACTGGCAAATAAGATGCTCGAAGCTTGACATAAATGCGTAGCGAAA TTTCACAACTTTCTTCAGTATAAGCATTGCAGCATACTCGATGAGCTCTTTAGAACCTGC TACTACGGCCAAAGTGGCTCTTATAACAACGAAAGGGCCTATTGAGATTGAATTATGGGC CAAGGAAGTGCCCAATATTACTAGAGTGTTCATTCAGAATTGTTTAGATAAAAAATATAT TGGTACAACATTTAATAAGGTGATAAAGGATTACTTGGTCCAAACAAGCAAAATCAAAGA ACCTGCGACATTAAAGCTAAAGGATGAATTTCATTCACGTTTGAAATTCAATAAGAGAGG TTTGGTGGGTGCTGTGCATGATGATAAACGAAATTCTAATAATGTTGATTCATTATTCAT AACGTTGAAACCTACACCAGAGTTCAATAACAATTACGTATTATTCGGCAAAATAATGGG CGACTCGATCTACAATGTAGTAAAAATCAATGAAAGTGAGCTTAAATCGGAGGAAACTCC AATGTACCCTGCAGAAATAACAGATATTAAGATCTTGGTACAATATTTTGATGACCTAGT TGAATCAAAGGAGCATATTGCAGAACCTGCGAAGAAGAAAGCAAAGAAAGCGAAGAAGCC TCGTGTCAAATTAGACTATACTTTAGAAGATGAAGAAGATACGGGATTCAAAATGAAATC AGCTCACGATTTGCTTTCAGATTCAAAATTGTCTAACAAATTGTATGCTAATAAAAAGAA AGGCCCCTCGGAGAATAACGAGAAACAGAAAACCATCGAAAAAGCACAGGATAGCAGTAT GGAAACTAAGAAGATAGTCCCTGAACGTCCAGATTACAAAGGTTCTGAGGAGATAGAAAA TGAAACGAAGATTACTTCATCTGAGAATATGAACCATGAAACCAAGCAAGACAAGCCTAA TTATAAAGCTAAATTAGATAGGAATCCAAATATTGATTCTGATTATGATTCTGATTTAGA CCTATCATCTTCTGAATCAATTGACCTATTTGCATTTAAGCAAAGTAACTTTCAAAGTAG CTAGTACAAATATATATTATTTTCTTGTGATGAATTAATGCAAAATGAAAGACCAGCTCT TGATAACAAATACATATAAAACAACATATAAAACAATAAACAAATACTAAATATAATGTC AATTATGAAGTAAACCCCGGAATATCATTATGGTCCTTAGGTATATTTGTTGAAGTTTCA AAATCAAAATTATCCAAATCAAGATCATTATTTAACCATGGATGGTTAGCTAATGACTTG CAATCATATCTTTCAGTAAGATCATATGTCAAACATTTCAAAATTAAATCATTTATTAAT TGAA
>DEHA2B11308g.cds ATGAGCTCTTTAGAACCTGCTACTACGGCCAAAGTGGCTCTTATAACAACGAAAGGGCCT ATTGAGATTGAATTATGGGCCAAGGAAGTGCCCAATATTACTAGAGTGTTCATTCAGAAT TGTTTAGATAAAAAATATATTGGTACAACATTTAATAAGGTGATAAAGGATTACTTGGTC CAAACAAGCAAAATCAAAGAACCTGCGACATTAAAGCTAAAGGATGAATTTCATTCACGT TTGAAATTCAATAAGAGAGGTTTGGTGGGTGCTGTGCATGATGATAAACGAAATTCTAAT AATGTTGATTCATTATTCATAACGTTGAAACCTACACCAGAGTTCAATAACAATTACGTA TTATTCGGCAAAATAATGGGCGACTCGATCTACAATGTAGTAAAAATCAATGAAAGTGAG CTTAAATCGGAGGAAACTCCAATGTACCCTGCAGAAATAACAGATATTAAGATCTTGGTA CAATATTTTGATGACCTAGTTGAATCAAAGGAGCATATTGCAGAACCTGCGAAGAAGAAA GCAAAGAAAGCGAAGAAGCCTCGTGTCAAATTAGACTATACTTTAGAAGATGAAGAAGAT ACGGGATTCAAAATGAAATCAGCTCACGATTTGCTTTCAGATTCAAAATTGTCTAACAAA TTGTATGCTAATAAAAAGAAAGGCCCCTCGGAGAATAACGAGAAACAGAAAACCATCGAA AAAGCACAGGATAGCAGTATGGAAACTAAGAAGATAGTCCCTGAACGTCCAGATTACAAA GGTTCTGAGGAGATAGAAAATGAAACGAAGATTACTTCATCTGAGAATATGAACCATGAA ACCAAGCAAGACAAGCCTAATTATAAAGCTAAATTAGATAGGAATCCAAATATTGATTCT GATTATGATTCTGATTTAGACCTATCATCTTCTGAATCAATTGACCTATTTGCATTTAAG CAAAGTAACTTTCAAAGTAGCTAG
>DEHA2B11308g.aa MSSLEPATTAKVALITTKGPIEIELWAKEVPNITRVFIQNCLDKKYIGTTFNKVIKDYLV QTSKIKEPATLKLKDEFHSRLKFNKRGLVGAVHDDKRNSNNVDSLFITLKPTPEFNNNYV LFGKIMGDSIYNVVKINESELKSEETPMYPAEITDIKILVQYFDDLVESKEHIAEPAKKK AKKAKKPRVKLDYTLEDEEDTGFKMKSAHDLLSDSKLSNKLYANKKKGPSENNEKQKTIE KAQDSSMETKKIVPERPDYKGSEEIENETKITSSENMNHETKQDKPNYKAKLDRNPNIDS DYDSDLDLSSSESIDLFAFKQSNFQSS*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/DEHA/DEHA2B11308p