DEHA2B03894g

similar to uniprot|P40416 Saccharomyces cerevisiae YMR301C ATM1 mitochondrial inner membrane transporter

Genomic environment map

Element type: CDS
Element length: 2091 nucleotides,
on sense strand of
Deha2B: 316474..318564.
Other names:
DEHA-CDS1165.1
DEHA-IPF9455
DEHA0B03806g
Coding sequence: 697 codons.

Database cross references:
EMBL: CR382134
GeneID: 2913198
GenomeReviews: CR382134_GR
HOGENOM: HBG758042

Computed results

None available yet

Homologs and Orthologs

Génolevures family GL3C0060
Consensus family of 46 members, sczltkgdpy (4 4 4 4 4 4 4 4 8 6)
46-member family, phyletic pattern sczltkgd-py, profile (4 4 4 4 4 4 4 4 0 8 6)
Proteins: SACE0K00440p SACE0L11945p SACE0M10274p SACE0P00352p CAGL0A01133p CAGL0E00385p CAGL0K00363p CAGL0M13739p ZYRO0D07106p ZYRO0F00396p ZYRO0F17050p ZYRO0G02244p SAKL0A10208p SAKL0C02244p SAKL0E00748p SAKL0H00968p KLTH0B01100p KLTH0B09482p KLTH0C11616p KLTH0F02024p KLLA0A10131p KLLA0B14256p KLLA0C01991p KLLA0D00748p ERGO0C05280p ERGO0F15840p ERGO0F21802p ERGO0G00880p DEHA2B03894p DEHA2B07172p DEHA2E23760p DEHA2F17226p PISO0A08030p PISO0B08097p PISO0I06388p PISO0J08193p PISO0M08064p PISO0M12134p PISO0N08219p PISO0N12443p YALI0A11473p YALI0B12188p YALI0E00880p YALI0E05973p YALI0E08030p YALI0F20174p
Search in: Génolevures Google

Homologs in protein family: GL3C0060
Orthologs: strict determination not possible; homologs must be refined manually

Protein DEHA2B03894p

similar to uniprot|P40416 Saccharomyces cerevisiae YMR301C ATM1 mitochondrial inner membrane transporter; RecName: Full=Iron-sulfur clusters transporter ATM1, mitochondrial; Flags: Precursor;

Protein domain map

Protein length: 696 amino acids
Protein family: GL3C0060

Database cross references:
HSSP: 2GHI
HSSP: Q7RBT4
InterPro: IPR001140
InterPro: IPR003439
InterPro: IPR003593
InterPro: IPR011527
InterPro: IPR017871
InterPro: IPR017940
KEGG: dha:DEHA2B03894g
PROSITE: PS00211
PROSITE: PS50893
PROSITE: PS50929
Pfam: PF00005
Pfam: PF00664
RefSeq: XP_457132.2
SMART: SM00382
UniProtKB/Swiss-Prot: Q6BXD7
UniProtKB: ATM1_DEBHA

Computed results for DEHA2B03894p

None available yet

Gene Ontology terms

Sequence data

>DEHA2B03894g.nt
ATGATAAAATGGGGTTTATTTGGGGCGGTTAAGCCTTTCAGATCCATGGTACCATTGTCA
CAAACGAGATCATTGATAATTTCCAAGTCTTCACTTGTACGTTCCAAACGAGTTTCAACC
ATAAGGCCCCAATTGGCCCCGGTTAATCCGTACTCAAAGATCTATGGAAGAAGATTTTTT
CTGTCTTCCCATAAGTTGGGAGTTAATACTAAGGAAGATTCGTCCACCTATTTATTTGGG
AGAAAGATATCCACCTCAGAACTGAAGATGCTTAAATCTTTGCTAGTGACTATATGGCCC
AAAAATAAACCAAGCTTTAAGCTTCGGGTCATATTTGCATTATCATTATTGATTGCTTCG
AAGTTATTGAACGTGGAAGTTCCGTTTTTCTTCAAGAAGATTATAGATGAGATGAATGTA
GATTGGAATGATCAATTAGGAACCGTGGGAACTGTAATTGGTACTTTGATTATTGCGTAT
GGTGGGGCAAGATTTGGAGCAGTCTTATTTGGAGAATTAAGAAATGCGGTATTTGCTTCA
GTAGCCCAAACAGCCATTAAGAGAGTTGCTCATAATACATTTGTACATTTGTTGAACATG
GATTTGAACTTCCATTTATCAAGACAGACAGGTGGGTTAACTAGGGCAATTGACAGAGGT
ACGAAAGGTATTTCATATGTCTTGAATGCCATGGTATTTCATATTATCCCTATTTCGTTT
GAAATTTCCATGGTGTGTGGAATTTTAATTTATAACTATGGATTATCCTTTGCTGCTGTT
ACATTGGCCACTATGTTGAGTTATTCAGTGTTTACTATAAAGACTACCGCATGGAGAACA
GGCTTCAGGAGACAAGCTAATAATGCAGACAATCAAGCTGCAACAGTTGCATTAGACTCA
TTGCTTAATTATGAGTCAGTTAAGTATTTTAATAATGAGGGATTTCAAGCATCAAAATAC
AATACGGCTTTAACCAATTACCAGAATGCTTCAGTTAAAGTAGCTACATCTTTGGCATAT
TTGAATGCTGGTCAAAACTTCATTTTTACGTCGGCTTTAACGGCAATGATGTATATGGGA
TGCAATGGAGTTGCTACAGGATCGTTAACAGTTGGTGACTTGGTGTTAATCAACCAGTTG
GTGTTTCAATTATCTGTTCCTTTGAGTTTTTTGGGCTCAGTTTACAGAGAATTAAAGCAA
TCTCTACTTGACATGGAAAATTTGTTCCAATTACAAAATCATGAAATAAAAATTAAAGAT
GCCTCAAATGCAAAACCATTATTATTAAACAGCACAGGTGTCCCAGGAGAAATTAAGTTT
GAAAACGTTACTTTTGGGTACCATCCAGATAGACCAATTTTACAAAATGCATCATTCACA
ATTCCCGCAGGGGAAAAAATTGCCATTGTTGGACCTTCAGGAAGTGGTAAATCAACTATA
TTAAGATTAATTTTCAGATTTTATGATGTTGAAAGCGGTAAAATTTTTATTGATGGTCAA
GATATTTCAAAGGTTACTGTCGAGTCATTAAGAAGGTCAATAGGTATTGTTCCACAGGAT
ACTCCTTTGTTTAACGACACTATTCTTGAGAATATCCGGTATGGAAGGTTAGATGCTACG
GATAAAGAAATCCATGAAATGATCGATAAAGTACAATTGACAAAGCTAATAGAGGATTCA
CCAAATGGAGTTAATACTATAGTTGGTGAAAGAGGTATGATGATTTCTGGTGGTGAGAAG
CAAAGATTGGCTATTGCTAGGTTACTTTTGAAAAGAGCTCCCATTACCTTATTTGATGAA
GCTACCTCCGCTTTGGACACTCATACAGAACAATCATTATTGAGAACAATTAGAAAAGTT
TTGACTAAGAAGGCAAATACACATATAGCTATTGCTCATAGGTTAAGAACTATTGCTGAT
GCTGATAAAATTATTGTTTTGAACAAGGGCCAAGTGCAAGAAGAAGGTACCCACCATAAC
TTGTTGCAGAATCCAAATTCATTGTATTCTCAATTATGGAATATCCAAGAGAATTTGGAT
ATCGATGAAGAATTGAATGAATATGCAAAGGAAACTGAAGAACAGAAATAG

>DEHA2B03894g.cds
ATGATAAAATGGGGTTTATTTGGGGCGGTTAAGCCTTTCAGATCCATGGTACCATTGTCA
CAAACGAGATCATTGATAATTTCCAAGTCTTCACTTGTACGTTCCAAACGAGTTTCAACC
ATAAGGCCCCAATTGGCCCCGGTTAATCCGTACTCAAAGATCTATGGAAGAAGATTTTTT
CTGTCTTCCCATAAGTTGGGAGTTAATACTAAGGAAGATTCGTCCACCTATTTATTTGGG
AGAAAGATATCCACCTCAGAACTGAAGATGCTTAAATCTTTGCTAGTGACTATATGGCCC
AAAAATAAACCAAGCTTTAAGCTTCGGGTCATATTTGCATTATCATTATTGATTGCTTCG
AAGTTATTGAACGTGGAAGTTCCGTTTTTCTTCAAGAAGATTATAGATGAGATGAATGTA
GATTGGAATGATCAATTAGGAACCGTGGGAACTGTAATTGGTACTTTGATTATTGCGTAT
GGTGGGGCAAGATTTGGAGCAGTCTTATTTGGAGAATTAAGAAATGCGGTATTTGCTTCA
GTAGCCCAAACAGCCATTAAGAGAGTTGCTCATAATACATTTGTACATTTGTTGAACATG
GATTTGAACTTCCATTTATCAAGACAGACAGGTGGGTTAACTAGGGCAATTGACAGAGGT
ACGAAAGGTATTTCATATGTCTTGAATGCCATGGTATTTCATATTATCCCTATTTCGTTT
GAAATTTCCATGGTGTGTGGAATTTTAATTTATAACTATGGATTATCCTTTGCTGCTGTT
ACATTGGCCACTATGTTGAGTTATTCAGTGTTTACTATAAAGACTACCGCATGGAGAACA
GGCTTCAGGAGACAAGCTAATAATGCAGACAATCAAGCTGCAACAGTTGCATTAGACTCA
TTGCTTAATTATGAGTCAGTTAAGTATTTTAATAATGAGGGATTTCAAGCATCAAAATAC
AATACGGCTTTAACCAATTACCAGAATGCTTCAGTTAAAGTAGCTACATCTTTGGCATAT
TTGAATGCTGGTCAAAACTTCATTTTTACGTCGGCTTTAACGGCAATGATGTATATGGGA
TGCAATGGAGTTGCTACAGGATCGTTAACAGTTGGTGACTTGGTGTTAATCAACCAGTTG
GTGTTTCAATTATCTGTTCCTTTGAGTTTTTTGGGCTCAGTTTACAGAGAATTAAAGCAA
TCTCTACTTGACATGGAAAATTTGTTCCAATTACAAAATCATGAAATAAAAATTAAAGAT
GCCTCAAATGCAAAACCATTATTATTAAACAGCACAGGTGTCCCAGGAGAAATTAAGTTT
GAAAACGTTACTTTTGGGTACCATCCAGATAGACCAATTTTACAAAATGCATCATTCACA
ATTCCCGCAGGGGAAAAAATTGCCATTGTTGGACCTTCAGGAAGTGGTAAATCAACTATA
TTAAGATTAATTTTCAGATTTTATGATGTTGAAAGCGGTAAAATTTTTATTGATGGTCAA
GATATTTCAAAGGTTACTGTCGAGTCATTAAGAAGGTCAATAGGTATTGTTCCACAGGAT
ACTCCTTTGTTTAACGACACTATTCTTGAGAATATCCGGTATGGAAGGTTAGATGCTACG
GATAAAGAAATCCATGAAATGATCGATAAAGTACAATTGACAAAGCTAATAGAGGATTCA
CCAAATGGAGTTAATACTATAGTTGGTGAAAGAGGTATGATGATTTCTGGTGGTGAGAAG
CAAAGATTGGCTATTGCTAGGTTACTTTTGAAAAGAGCTCCCATTACCTTATTTGATGAA
GCTACCTCCGCTTTGGACACTCATACAGAACAATCATTATTGAGAACAATTAGAAAAGTT
TTGACTAAGAAGGCAAATACACATATAGCTATTGCTCATAGGTTAAGAACTATTGCTGAT
GCTGATAAAATTATTGTTTTGAACAAGGGCCAAGTGCAAGAAGAAGGTACCCACCATAAC
TTGTTGCAGAATCCAAATTCATTGTATTCTCAATTATGGAATATCCAAGAGAATTTGGAT
ATCGATGAAGAATTGAATGAATATGCAAAGGAAACTGAAGAACAGAAATAG

>DEHA2B03894g.aa
MIKWGLFGAVKPFRSMVPLSQTRSLIISKSSLVRSKRVSTIRPQLAPVNPYSKIYGRRFF
LSSHKLGVNTKEDSSTYLFGRKISTSELKMLKSLLVTIWPKNKPSFKLRVIFALSLLIAS
KLLNVEVPFFFKKIIDEMNVDWNDQLGTVGTVIGTLIIAYGGARFGAVLFGELRNAVFAS
VAQTAIKRVAHNTFVHLLNMDLNFHLSRQTGGLTRAIDRGTKGISYVLNAMVFHIIPISF
EISMVCGILIYNYGLSFAAVTLATMLSYSVFTIKTTAWRTGFRRQANNADNQAATVALDS
LLNYESVKYFNNEGFQASKYNTALTNYQNASVKVATSLAYLNAGQNFIFTSALTAMMYMG
CNGVATGSLTVGDLVLINQLVFQLSVPLSFLGSVYRELKQSLLDMENLFQLQNHEIKIKD
ASNAKPLLLNSTGVPGEIKFENVTFGYHPDRPILQNASFTIPAGEKIAIVGPSGSGKSTI
LRLIFRFYDVESGKIFIDGQDISKVTVESLRRSIGIVPQDTPLFNDTILENIRYGRLDAT
DKEIHEMIDKVQLTKLIEDSPNGVNTIVGERGMMISGGEKQRLAIARLLLKRAPITLFDE
ATSALDTHTEQSLLRTIRKVLTKKANTHIAIAHRLRTIADADKIIVLNKGQVQEEGTHHN
LLQNPNSLYSQLWNIQENLDIDEELNEYAKETEEQK*

Legend and notes

Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences

Color	Nucleotide sequence and Coding sequence	Predicted translation product
RED	start and stop codons	Initial methionine and sequence end
BLUE	coding sequence	protein sequence
grey	non-coding sequence (upstream, downstream or intron)
grey	donor and acceptor splicing sites

Genetic Elements

DEHA2B03894g

DEHA2B03894g

Genomic environment map

Computed results

Homologs and Orthologs

Protein DEHA2B03894p

Protein domain map

Computed results for DEHA2B03894p

Gene Ontology terms

Sequence data

Nucleotide sequence

Coding sequence

Predicted translation product

Legend and notes