HomeCAGL0M01958g
similar to uniprot|P38086 Saccharomyces cerevisiae YBR073w RDH54 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA
Element type: CDS
Element length: 2763 nucleotides,
on anti-sense strand of
Cagl0M: complement(238113..240875).
Other names:
CAGL-CDS0569.1
CAGL-IPF6374
Coding sequence: 921 codons.
Element length: 2763 nucleotides,
on anti-sense strand of
Cagl0M: complement(238113..240875).
Other names:
CAGL-CDS0569.1
CAGL-IPF6374
Coding sequence: 921 codons.
Database cross references:
EMBL: CR380959
GeneID: 2891756
HOGENOM: Q6FK14
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR380959
GeneID: 2891756
HOGENOM: Q6FK14
Homologs and Orthologs
Homologs in protein family: GL3M4588Orthologs: strict determination not possible; homologs must be refined manually
Protein CAGL0M01958p 
similar to uniprot|P38086 Saccharomyces cerevisiae YBR073w RDH54
Protein domain map
Database cross references:
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
KEGG: cgr:CAGL0M01958g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_449430.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6FK14
UniprotKB: Q6FK14_CANGA
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR014001
InterPro: IPR014021
KEGG: cgr:CAGL0M01958g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_449430.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6FK14
UniprotKB: Q6FK14_CANGA
Sequence data
>CAGL0M01958g.nt TTCCTGACGATCTTGCCCAGATATCTTCGTAAAATGGTGTGGTTGACAGATATTGTGCAT GCAACGAGCTTCTTATGTCTTCTTCTGTAGTAAGCACGGATGTCATTGGAAAATCGCGCC AGTAATGCGCCCTAAAATCGCTATGCTTAGTCATCATTGTGAGCTCCGAGATCTGTGATA TCGCAAATATGGCTTCCCCACGGAAGCCCATAGTACCATTGCCATTACCAAATCTCTCTA AGTCCCGAAAGTTGCGTATCTTGGATGTAATATGAGGCCTTCCCAACAAATCCAAATCCT TTCTAGTCATACCACAGCCATCATCTGCCACCATACACATGTTCTTCTTGATACTAAAGC TTACATCGACTGTACTGGCACCTGCATCCACTGCATTCTGTAACAGCTCTCTCAAAACAC TGTCAATACCGGTTATCTGAGTATCCGCGCGCAAAACCTGCCATGTTTCTTTCGGAAGAA CGTGTATCATATCATGTCAAACAGTAATATCCACCGATATCTATTTGACTCCCCTCAATC AATGAGCTAGTGAGCTTGTTGTATAGGCAAAACGTCACAGTAACCCACCCTGATTGTGCT GATCCCCTTCATAAACCATACAGTTTTGGTAGCTAGCACATCTTGTATGTACCATTTAGC ATAAAATCACAAAGGCTACCGCCCATCAGAGACCTTATTGCCGGTATTATCCAACAAGAA TGGGGAAGGCGGGAAGTAGTTCGGAGTGATTTGAGGCCGGGTAAATCTCATCGCGTCCCT GGCAATAATCAAATAACAATAATATCCTCAAAGTTGAGCCTTTGGCGTATTGCCAATCGT GAGAAACAGTAGCTGGGGGTTTATAGCAAATACAGATGTTGCTGTAAGCATGATCAGTCT TCCCCAAACCAATGGAAGACTTTATTAGGACTCTGAGAGTTTTTGTTTAGTTTCGCTTGG CCTTATATTTCCTGATGGAAGGCGAGTGTTAAAGATTCGAATGCAGTTGCCACGGTATGA GAACAAACCATTCAAGCCACCAAGAAGGATAATACCTTCTGGAACTGTTCCTCGACCAGT TCGCTCTGTGGGCGGTTCCACAGCATCGACTTTTGGTGTAAAGAGAACATATGCTCAAAC TGCTGAATTGCAGCCTGCTAGATCGAATGACACCAGTGATAGGAGCAAAACTGATACAAC TAGGAGATATTTTACCATCATGTACCGAAAATACACAACCAAGAAGAATAAAACATGGAA CGGAGATGGATATGCTATTCTGATACTTGATGCTGCTATTAAATTGATAATCTACAATGA GCAAGGGAAGCCTCTCGGCTCAAGTACTAAAGTTAACATTGATACGCTTTTCGATTCCAT TTATACCACAAAAGGTCTTGAGTTCCAGTTGGATTATGAAATATTTGATACTGATGAAAT CAGAAAGGTTAGAATATTACTAGGGAAAGAACCTGACTCTAATTTGATACCTTCTCAAAC TTCTAGTAGCCAGCAAAATGCAATAGATAAGGGCATCTCCTCAGAATTACCAGTATCGCA ACTTTTTACTAAGTCTACTAAGAAATTCATCTCTCCAACACTAAAAACTAACCCTAATGC TAGACCTATCTCATCAATGAATAAGCAAATAGCGAAAACAAATAGACCAGAAAATACTGT TCCTACACAAAAGTTCAGAAGCTTATTTGATTGCAATACAATTGAGAATCCACTTATTAT GAATACGTTTCAGGGTTCTGAAGTCGACATTATAGTGGATCCCCTTTTATGCAAAATGCT TCGGAACCACCAGAGAATTGGAGTCAAATTTATGTATGATTGTTTATTGGGATTGGAAAC CAACCTGACTGCTGAGTCTACTGATGACAAATCTTGCCGGCTTGAGAGAGACTCAGATAT TAAAGGTTGCATTTTAGCCGATGATATGGGACTTGGTAAAACTCTAATGACAATCACATT GATATGGACATTACTAAAACAAACACCCTTTGCATCAAAAGTGCAGTGTTCACAACTTGG TGTACCTCTGAGTGGGATGATAAGCAAAGTAGTCATTGTATGTCCTGTTACTTTAATTGG CAATTGGAAACGAGAATTTAAAAAATGGTTGGGACTAAACAGAATTGGAATTTTAACTCT TAACCCCAAAAACAATGTGGACATGGATAAAATAAGTGTGAGAAACTTCATAAAAGTTAA TAGAACTTACCAGGTACTAATTTTAGGTTATGAAAAAGTATTGACAGTCCAAGAAGAACT TCTTAAACAAAAAGATAAACTAGACTTACTTATATGCGATGAAGGTCATCGCCTAAAAAA TGGAGCATCGAAAATTCTTAAAGTATTGAAATCTTTAGATATCGACAAGAAAGTGATTTT GACGGGGACACCGATACAGAATGACCTGAATGAGTTCTTTACGATCATCGATTTTGTGAA TCCTGGAGTTTTAGGAACTTACGCAAGCTTCAAAAAGTTGTATATCAATCCTATATCAAG GGCGAGAGATATTAATAACAAATTCAATACAAAAGTAATTGAACAAGGTGAAGAGAAATC TAATCAACTTATAGAATTTACCAAGAGATTTATTCTTAGACGGTCAAACAATATCCTATC AAAATTTCTGCCTCCCAAAACAGATATTATTTTATTCTGTAGACCTACCATTGAACAGAT CAAAGCCTTCAGAGACATTATCGAAAATGTAAGGGTTGATATGAATAACATCACATTTAA TACTTCCCTTGGGCTGATCAATTTGATGAAAAAGGTTTGTAACTCTCCATCGTTGTTATG TAATGACCCTTACTATCAATCTAATGTGGATAGCAATATATTCACAGTTTCCAATAAATC TAACAGCTCCGGTAAATTAACTGTGCTTCTGGAATTACTGCTAGAAATCAAAGCTACTTC TCCTATGGAGAAAGTTGTTATAGTATCAAATTACACACAGTCATTGGATATTATACAAGG ACTCATGAACAGTAACCAGTTATCCAATTGCAGATTAGACGGAGCAACGCCAGCTAAGCA ACGTGATATGTTGGTCAACACATTTAATAATAACCCCAACATTTTTGGTTTCTTATTAAG TGCTAAGGCAGGTGGTGTTGGATTAAATTTGATTGGTGCCTCTCGCTTGGTTTTGTTCGA TAATGACTGGAATCCAGCTGTTGACTTACAAGCAATGTCTCGTATTCACAGAGAAGGTCA GAAAAGACCATGCTACATTTACAGACTAATAACAACTGGCTGTATAGATGAAAAGATATT ACAAAGGCAGCTCATGAAGCATAATTTAACCAGGAAATTCTTATCCTCAAATACCAGCGA TACCGGCTCAGCAAATGATGATCTATTCGACAAATCAGACTTGAAAGATTTGTTCACAAT TCATCAAAATACTAAGAGTAATACACACGACCTGATATGTAGATGCGATGGATTGGGTGA GGAGTTTGATGACGATGAAGAGGTATTAAAGGCACCTGCATTGGACGGAAGTTTTGAACA ATGGTCCAATGCACTCGATGCTAAAAGAAAAATGGATGTATTAGAGTCACAAAGAACACA ACTTGAAAAGAAACTTCTAAAGCAATGCCTTCTCGATTATAAACATATAGATCCTGATCG ATCCTTAGACCTCTACGATGATGTTGCTACAGAGGTATACAAAAAAGGGAAAAAGAATAT AACGTTTGCTTTCATCAAGGTTGGAAATGTGATAATAGAATGAAAAGGCTCACGATCTGA AAACAAGAATCGCGCACATATCTATCTACCTGTCCAACATATATATTGTAAATCCTTAAA ATTTTGATATTCAGAACATATTTTATTCATATAATCGTACTACCTTCCTCTTCTATATGC AACATTTTTGTATTAATGTCAATTTTCTTTAGGCCAATTTGACATGAGCTAGAAAGCAGC GCAGAAAGCTTCAAGGGACAGAACATATTAAACCAAAATATAAACAATCCGGGATGACCT GAATTATTAAATGAAATGAGAGGATAAAGTATTTAAATCCTTT
>CAGL0M01958g.cds ATGCAGTTGCCACGGTATGAGAACAAACCATTCAAGCCACCAAGAAGGATAATACCTTCT GGAACTGTTCCTCGACCAGTTCGCTCTGTGGGCGGTTCCACAGCATCGACTTTTGGTGTA AAGAGAACATATGCTCAAACTGCTGAATTGCAGCCTGCTAGATCGAATGACACCAGTGAT AGGAGCAAAACTGATACAACTAGGAGATATTTTACCATCATGTACCGAAAATACACAACC AAGAAGAATAAAACATGGAACGGAGATGGATATGCTATTCTGATACTTGATGCTGCTATT AAATTGATAATCTACAATGAGCAAGGGAAGCCTCTCGGCTCAAGTACTAAAGTTAACATT GATACGCTTTTCGATTCCATTTATACCACAAAAGGTCTTGAGTTCCAGTTGGATTATGAA ATATTTGATACTGATGAAATCAGAAAGGTTAGAATATTACTAGGGAAAGAACCTGACTCT AATTTGATACCTTCTCAAACTTCTAGTAGCCAGCAAAATGCAATAGATAAGGGCATCTCC TCAGAATTACCAGTATCGCAACTTTTTACTAAGTCTACTAAGAAATTCATCTCTCCAACA CTAAAAACTAACCCTAATGCTAGACCTATCTCATCAATGAATAAGCAAATAGCGAAAACA AATAGACCAGAAAATACTGTTCCTACACAAAAGTTCAGAAGCTTATTTGATTGCAATACA ATTGAGAATCCACTTATTATGAATACGTTTCAGGGTTCTGAAGTCGACATTATAGTGGAT CCCCTTTTATGCAAAATGCTTCGGAACCACCAGAGAATTGGAGTCAAATTTATGTATGAT TGTTTATTGGGATTGGAAACCAACCTGACTGCTGAGTCTACTGATGACAAATCTTGCCGG CTTGAGAGAGACTCAGATATTAAAGGTTGCATTTTAGCCGATGATATGGGACTTGGTAAA ACTCTAATGACAATCACATTGATATGGACATTACTAAAACAAACACCCTTTGCATCAAAA GTGCAGTGTTCACAACTTGGTGTACCTCTGAGTGGGATGATAAGCAAAGTAGTCATTGTA TGTCCTGTTACTTTAATTGGCAATTGGAAACGAGAATTTAAAAAATGGTTGGGACTAAAC AGAATTGGAATTTTAACTCTTAACCCCAAAAACAATGTGGACATGGATAAAATAAGTGTG AGAAACTTCATAAAAGTTAATAGAACTTACCAGGTACTAATTTTAGGTTATGAAAAAGTA TTGACAGTCCAAGAAGAACTTCTTAAACAAAAAGATAAACTAGACTTACTTATATGCGAT GAAGGTCATCGCCTAAAAAATGGAGCATCGAAAATTCTTAAAGTATTGAAATCTTTAGAT ATCGACAAGAAAGTGATTTTGACGGGGACACCGATACAGAATGACCTGAATGAGTTCTTT ACGATCATCGATTTTGTGAATCCTGGAGTTTTAGGAACTTACGCAAGCTTCAAAAAGTTG TATATCAATCCTATATCAAGGGCGAGAGATATTAATAACAAATTCAATACAAAAGTAATT GAACAAGGTGAAGAGAAATCTAATCAACTTATAGAATTTACCAAGAGATTTATTCTTAGA CGGTCAAACAATATCCTATCAAAATTTCTGCCTCCCAAAACAGATATTATTTTATTCTGT AGACCTACCATTGAACAGATCAAAGCCTTCAGAGACATTATCGAAAATGTAAGGGTTGAT ATGAATAACATCACATTTAATACTTCCCTTGGGCTGATCAATTTGATGAAAAAGGTTTGT AACTCTCCATCGTTGTTATGTAATGACCCTTACTATCAATCTAATGTGGATAGCAATATA TTCACAGTTTCCAATAAATCTAACAGCTCCGGTAAATTAACTGTGCTTCTGGAATTACTG CTAGAAATCAAAGCTACTTCTCCTATGGAGAAAGTTGTTATAGTATCAAATTACACACAG TCATTGGATATTATACAAGGACTCATGAACAGTAACCAGTTATCCAATTGCAGATTAGAC GGAGCAACGCCAGCTAAGCAACGTGATATGTTGGTCAACACATTTAATAATAACCCCAAC ATTTTTGGTTTCTTATTAAGTGCTAAGGCAGGTGGTGTTGGATTAAATTTGATTGGTGCC TCTCGCTTGGTTTTGTTCGATAATGACTGGAATCCAGCTGTTGACTTACAAGCAATGTCT CGTATTCACAGAGAAGGTCAGAAAAGACCATGCTACATTTACAGACTAATAACAACTGGC TGTATAGATGAAAAGATATTACAAAGGCAGCTCATGAAGCATAATTTAACCAGGAAATTC TTATCCTCAAATACCAGCGATACCGGCTCAGCAAATGATGATCTATTCGACAAATCAGAC TTGAAAGATTTGTTCACAATTCATCAAAATACTAAGAGTAATACACACGACCTGATATGT AGATGCGATGGATTGGGTGAGGAGTTTGATGACGATGAAGAGGTATTAAAGGCACCTGCA TTGGACGGAAGTTTTGAACAATGGTCCAATGCACTCGATGCTAAAAGAAAAATGGATGTA TTAGAGTCACAAAGAACACAACTTGAAAAGAAACTTCTAAAGCAATGCCTTCTCGATTAT AAACATATAGATCCTGATCGATCCTTAGACCTCTACGATGATGTTGCTACAGAGGTATAC AAAAAAGGGAAAAAGAATATAACGTTTGCTTTCATCAAGGTTGGAAATGTGATAATAGAA TGA
>CAGL0M01958g.aa MQLPRYENKPFKPPRRIIPSGTVPRPVRSVGGSTASTFGVKRTYAQTAELQPARSNDTSD RSKTDTTRRYFTIMYRKYTTKKNKTWNGDGYAILILDAAIKLIIYNEQGKPLGSSTKVNI DTLFDSIYTTKGLEFQLDYEIFDTDEIRKVRILLGKEPDSNLIPSQTSSSQQNAIDKGIS SELPVSQLFTKSTKKFISPTLKTNPNARPISSMNKQIAKTNRPENTVPTQKFRSLFDCNT IENPLIMNTFQGSEVDIIVDPLLCKMLRNHQRIGVKFMYDCLLGLETNLTAESTDDKSCR LERDSDIKGCILADDMGLGKTLMTITLIWTLLKQTPFASKVQCSQLGVPLSGMISKVVIV CPVTLIGNWKREFKKWLGLNRIGILTLNPKNNVDMDKISVRNFIKVNRTYQVLILGYEKV LTVQEELLKQKDKLDLLICDEGHRLKNGASKILKVLKSLDIDKKVILTGTPIQNDLNEFF TIIDFVNPGVLGTYASFKKLYINPISRARDINNKFNTKVIEQGEEKSNQLIEFTKRFILR RSNNILSKFLPPKTDIILFCRPTIEQIKAFRDIIENVRVDMNNITFNTSLGLINLMKKVC NSPSLLCNDPYYQSNVDSNIFTVSNKSNSSGKLTVLLELLLEIKATSPMEKVVIVSNYTQ SLDIIQGLMNSNQLSNCRLDGATPAKQRDMLVNTFNNNPNIFGFLLSAKAGGVGLNLIGA SRLVLFDNDWNPAVDLQAMSRIHREGQKRPCYIYRLITTGCIDEKILQRQLMKHNLTRKF LSSNTSDTGSANDDLFDKSDLKDLFTIHQNTKSNTHDLICRCDGLGEEFDDDEEVLKAPA LDGSFEQWSNALDAKRKMDVLESQRTQLEKKLLKQCLLDYKHIDPDRSLDLYDDVATEVY KKGKKNITFAFIKVGNVIIE*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/CAGL/CAGL0M01958g