CAGL0L03740g


highly similar to uniprot|Q12189 Saccharomyces cerevisiae YOR095c RKI1 Ribose-5-phosphate ketol-isomerase, catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway

Genomic environment map

Element type: CDS
Element length: 783 nucleotides,
on anti-sense strand of
Cagl0L: complement(434489..435271).
Other names:
CAGL-CDS3917.1
CAGL-IPF2684
Coding sequence: 261 codons.
Database cross references:
EMBL: CR380958
GeneID: 2890542
HOGENOM: Q6FLF8

Computed results  

None available yet

Homologs and Orthologs

Homologs in protein families: GL3R2152 GL3R2152.N1
Orthologs: strict determination not possible; homologs must be refined manually

Protein CAGL0L03740p  


highly similar to uniprot|Q12189 Saccharomyces cerevisiae YOR095c RKI1 D-ribose-5-phosphate ketol- isomerase

Protein domain map

Protein length: 260 amino acids
Protein family: GL3R2152
Database cross references:
InterPro: IPR001412
InterPro: IPR004788
KEGG: cgr:CAGL0L03740g
PANTHER: PTHR11934
Pfam: PF06026
ProDom: PD005813
RefSeq: XP_448936.1
SMR: Q6FLF8
TIGRFAMs: TIGR00021
UniProtKB/Swiss-Prot: Q6FLF8
UniprotKB: RPIA_CANGA

Computed results for CAGL0L03740p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

None available yet

Sequence data  

Nucleotide sequence

>CAGL0L03740g.nt
GAAAAAGAAAGGAACTAACTAACCAGTGTTAGGGCAAAACATCTTTGGATATAGTAATAA
GATAGGCATCACAAGGGCACCTATAACAATAAAAAGTGGGGTCCCTCCAATCGCATAACT
CCCCATTGTTCTAAGTACATATGAACAATTTTAAAAACCAGGGCATAAATGGTCACAGCA
AGACAATAGAAATAAGTTGTGAAGAGGTAGGAGCTCATCGCAATAGAACCAAAAAAATAA
TATTGAAAAAATATTTTATCACATCAATGTAAATTTTTTTTGCTATTATTCGAAGAAATG
TATGCAGGAAATCTGGTTGTGAGATGCCCAAAAAAAGAAAGAAAAACTATTGACACATGC
ATACGTGAACAACTGAAATAGCAATTGGAATGTCATATCAATTATGCAGGTTACAATAGA
TTGGTGCAATCAAACCACCCTTCCCCCAAAAAAAATAAGTATATAAGATAAGTAAACTAA
CCTCGATTTCTCGAGAAAATGGGATATTTTTACAGGTCAGTCCAAAAGTATTTCAGCTCT
TGATTGATATTCCAGATGATATCAGTTCTAGATCGCTCACTTCTTAGTTAAGTCCCCTTT
CCCGTTCAATGACACTCCTATTTCATATGTAGAGTTCCCTTTTCTCTCCTTTTTAGCTTT
TTCTGTCCTATTATCTCTCTTGTACGGTTGTAACTGATTTACTTATTGGGAGAAAAATTT
ATTTAGTGATGAGATGACTTTCATTACCAAAGGAATAACAGTAAACCATTTTACTAATTT
ACATTTTAGATTTTAGGAGGATAATAGTTGTTCAAAAAAAGGGGCAATAAAGTAATTAAC
CACCCTTATATATTTAAAAGGCAAGAAGTTCAACAAACTATCGAATTCGGATATTTAAGG
GCTATTTTTCCAATCCTTTAATACAACCGATAACAAACTCCGCTATACTGAAATATAGCA
TCTTCTGCCAAGTACAGAAAAAAAATTACAAAAGTTTATAATGTCCTACACCCCATTGCC
AAATATTAACGACTTCCCAACTCTAGGTAATCCTCTAGAAGATGCCAAGAGAGCAGCTGC
TTATCGTGCTGTTGATGAAAACTTGAACTTTGACGAACACAGAATCATCGGTGTAGGTAG
TGGTAGTACTGTTGTTTACGTTGCCGAGCGAATTGGTCAATACTTGAAGGATGAGAAGTA
CCATGACAAAGTATCCAAATTTATCTGTATCCCTACTGGTTACCAATCCCGTAACTTGAT
TCAAGATAATGGTTTAATTCTAGGTTCTATCGAGCAGCACCCCCATGTAGACATTGCCTT
TGACGGTGCTGACGAAGTTGACCACAACTTGCAATTGATCAAAGGTGGTGGTGCATGCTT
GTTCCAAGAAAAATTGGTATCCACTAGTGCAAAAATCTTCATTGTTGTTGCTGATTCCAG
AAAAAAATCGGATACTAACTTGGGGATAAATTGGAAGAGAGGTGTGCCAATAGAAATCGT
GCCTTCGGCCTGGTCAAGAGTTCAACATGACTTGACTAGCATTCTCCATGCAAACTCTGC
TCCTGTAAGGCAAGGTGGCAGTGCTAAAGCCGGTCCAGTTGTCACTGATAACATGAACTT
CTTGATCGACGCTGACTTCGGTGAAATTCAAGATCCAAAAGCCCTACATGAACAAATCAA
AATGTTGGTGGGTGTCGTCGAAACTGGTCTGTTCATTGATAACGCTCACAGAGCTTACTT
CGGTAAGCCTGACGGTAGCGTTGAAGTCATTGATAAGAAATAAGATTCTTTTGTACAATG
AACAAAGTCCACTTAATATTTGTTCTTTTCTCCTTTTTTATTATACTTTTCCCAGCCCAT
TTAATACTTTCAATTTTTTACCATCTGTTCTTCAATAATATCACAAGAAGCAACGAACGA
TTAATTATTTTTACCCACTATCGCTCTAGATTTTGGTGAACCATAAAACTGTATATCACT
TACGTACATGCGAGAATCAATTTCTTTCATTCTCTATTGAGAGAAAGCCGTGGTGAAATG
GCATTTAATTCGTGTATATATTTTTCAATGACATTCCTCATTG

Coding sequence

>CAGL0L03740g.cds
ATGTCCTACACCCCATTGCCAAATATTAACGACTTCCCAACTCTAGGTAATCCTCTAGAA
GATGCCAAGAGAGCAGCTGCTTATCGTGCTGTTGATGAAAACTTGAACTTTGACGAACAC
AGAATCATCGGTGTAGGTAGTGGTAGTACTGTTGTTTACGTTGCCGAGCGAATTGGTCAA
TACTTGAAGGATGAGAAGTACCATGACAAAGTATCCAAATTTATCTGTATCCCTACTGGT
TACCAATCCCGTAACTTGATTCAAGATAATGGTTTAATTCTAGGTTCTATCGAGCAGCAC
CCCCATGTAGACATTGCCTTTGACGGTGCTGACGAAGTTGACCACAACTTGCAATTGATC
AAAGGTGGTGGTGCATGCTTGTTCCAAGAAAAATTGGTATCCACTAGTGCAAAAATCTTC
ATTGTTGTTGCTGATTCCAGAAAAAAATCGGATACTAACTTGGGGATAAATTGGAAGAGA
GGTGTGCCAATAGAAATCGTGCCTTCGGCCTGGTCAAGAGTTCAACATGACTTGACTAGC
ATTCTCCATGCAAACTCTGCTCCTGTAAGGCAAGGTGGCAGTGCTAAAGCCGGTCCAGTT
GTCACTGATAACATGAACTTCTTGATCGACGCTGACTTCGGTGAAATTCAAGATCCAAAA
GCCCTACATGAACAAATCAAAATGTTGGTGGGTGTCGTCGAAACTGGTCTGTTCATTGAT
AACGCTCACAGAGCTTACTTCGGTAAGCCTGACGGTAGCGTTGAAGTCATTGATAAGAAA
TAA

Predicted translation product

>CAGL0L03740g.aa
MSYTPLPNINDFPTLGNPLEDAKRAAAYRAVDENLNFDEHRIIGVGSGSTVVYVAERIGQ
YLKDEKYHDKVSKFICIPTGYQSRNLIQDNGLILGSIEQHPHVDIAFDGADEVDHNLQLI
KGGGACLFQEKLVSTSAKIFIVVADSRKKSDTNLGINWKRGVPIEIVPSAWSRVQHDLTS
ILHANSAPVRQGGSAKAGPVVTDNMNFLIDADFGEIQDPKALHEQIKMLVGVVETGLFID
NAHRAYFGKPDGSVEVIDKK*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites