HomeCAGL0K07766g
highly similar to uniprot|P31244 Saccharomyces cerevisiae YBR114w RAD16 Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair
Element type: CDS
Element length: 2493 nucleotides,
on sense strand of
Cagl0K: 771764..774256.
Other names:
CAGL-CDS0732.1
CAGL-IPF3153
Coding sequence: 831 codons.
Element length: 2493 nucleotides,
on sense strand of
Cagl0K: 771764..774256.
Other names:
CAGL-CDS0732.1
CAGL-IPF3153
Coding sequence: 831 codons.
Database cross references:
EMBL: CR380957
GeneID: 2890360
HOGENOM: Q6FMI6
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR380957
GeneID: 2890360
HOGENOM: Q6FMI6
Homologs and Orthologs
Homologs in protein families: GL3C0553 GL3C0553.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein CAGL0K07766p 
highly similar to uniprot|P31244 Saccharomyces cerevisiae YBR114w RAD16 DNA repair protein
Protein domain map
Database cross references:
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
KEGG: cgr:CAGL0K07766g
PROSITE: PS00518
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00097
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_448558.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6FMI6
UniprotKB: Q6FMI6_CANGA
Gene3D: G3DSA:3.30.40.10
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR001841
InterPro: IPR013083
InterPro: IPR014001
InterPro: IPR014021
KEGG: cgr:CAGL0K07766g
PROSITE: PS00518
PROSITE: PS50089
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00097
Pfam: PF00176
Pfam: PF00271
RefSeq: XP_448558.1
SMART: SM00184
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6FMI6
UniprotKB: Q6FMI6_CANGA
Gene Ontology terms
| GO:0008270 | zinc ion binding |
| GO:0005524 | ATP binding |
| GO:0005515 | protein binding |
| GO:0004386 | helicase activity |
| GO:0003677 | DNA binding |
Sequence data
>CAGL0K07766g.nt AGTACAAGTAAATATTACCGACTGCTTAGGTATTTGTAATTACACAAATTATACAATTCT TGAACCAATTTCTAGGAAATATAGCACTTCAATTCCCGAATAATGACAATTTCATCTAAT GAGAATTCAGCCAGTCTAAGAGCCCAGATTCAACAATGTCTTGTTGAATCAGGTAACTAT GAGGCTATATCAAATGAACTCACTGAGAGGTTACTCAAAGACGGATGGCTTGACGAGGTT AAGAAATTAGCCAGAGAAGAAATCTCTCAAGAGGACTCGCCAAACTTCAGTAAGGCACTA TCCCAGATCGAGCCACAGGCTTTAGGTATGTTATAATCTCTTCCAACTATAAGTTCTGAC CTTGTTATTTGTTTGGCATCAGCATACTAACAGGAACATATATTCCAAACACTCCCCACA TATAAGCTACCATTAAGCTCTCGGAGGTATATTTATATCTAACTTACAGATTTAGTACAG CAATCTACAAAAGATGCCATTATGAGGAAAATAACTGCATTCCTAGAAGAGATAGTTGAA ACTGAATAAAATGGTCGTATTACGATCAGGATGATTCAGTTTAATTCTTGACTTCTCATG AACAATCAAAGGTATGTACTGGTTGTGATGATATGGAATCCGCTATGCTCATACAGCCAG GGCCATGCAGTGCTAGAAGGGCCCTAACTGCTTCATCAAGAACACTACACTAAATGTGAT CCAAGCAGGGTGGCAAGGTGTCAGGATTATGTCACTATCTTTCTTTTTATCTTCGGTCTT TGCAGTGAAAAGTCCATAGAGCCTGAGTCCTCAATTTGATTTCCTCCCGGAATGACAAAT TTCATTTTTTTTGAAAAATTTCATGATTTTACTACAAAGGGATTGCGATGAGCTGCTTTT AATTAAAGTTTTAAAAGGAATCATGTTTTCTGGGAGTTTTGAAATTTAATGAAGAAGTTC TATATTGATTAAATACTGCGGGGACGCTTGTCTTGAAGGGATGGAGGAAGGTGGATTCAT TAGGAGAACAAGGAGCCGTGTTGGTCGTGCTAAGCAGAAGAAAGTCAGCTATGTGGAGGT GAGTAGTAGCGAAGATGAGCAATCTACTCTTACTAGTGTGTCTGGAGGACGGAAGGACTC TAGCGAGAGTACTGTTGTTGGATCAAGTGCTGACGATCCTATCGATCTTGACTATGAGGA GGAGGAGGATGAAGAGTTTGTCGATGCAGAGGAAGAGGTGGCAAACCATGATGCTGAAGA TGATACTGCCGCAGAGATGAGGACTGCTAAAGTGAAAAGGGGAAAGAGAAGTAGAAGATT AAAACCCACTCTGATGGTAGATTTGTCGAAGGTGGAGTTTGATGAGGATGGCCATGCCAG GATGAAGAAAGAAGAGCCTGATAATGCCCTTCCCGATGTACCAGACGAACCAAATATACC AGAAATAAAGGAAGATGATGAAGATGATCAACCTTTAAGTAAGAAGAGGAAAACGACAGC AAAAAAATCAAGGAAGAAGAAGGAGCCAAAGATCAAGCTTACCCCTTATCAGAGGACCAC ACTGAGGTTGTTTGAACACCATCCAGAACTTGCCAATGTTTTCCCTGATCTACAAAATGC TCCTAAATATGAGCCTCATAGAGCACCTCAACCGGCAGACATGGGTGTCAAATTACTTCC TTTTCAGTTGGAAGGTTTGCACTGGATGCTTTCACAGGAAGATAGTATATATAACGGCGG AGTTCTTGCTGATGAAATGGGGATGGGTAAGACTATTCAAACTATTGCTCTACTCATGAA TGACAGAAGCAAGAAGCCATCTCTAGTGGTGGCACCAACAGTGGCTCTTATGCAATGGAA GAATGAGATTGAACAACACACAAATGGGGCTCTTTCCACATATATATATCACGGTGCATC CAGAACTATTAATATTCATGATTTAAAAGACATTGATGTGATATTAACGACATACTCTGT CCTTGAATCCGTTTTCAGGAAGCAGAACTACGGGTTTAGGAGGAAGAATGGCCTGGTGAA GGAAAAATCGCTACTACATAATATTGATTTTTACAGAGCTATTCTTGATGAAGCCCATAA TATCAAGGATAGAACTAGTAATACTTCTCGAGCCGTCAACGCTCTTAAGACACAAAAGAG GTGGTGTCTATCCGGTACACCTTTGCAGAACAGAATTGGCGAAATGTATTCATTGATCAG GTTTTTGGATATCAATCCATTCGCGAAATATTTTTGTACAAAATGTGAATGTGCCTCTAA AGAATGGAAATTTAGTGATAATATGCACTGTGATAGTTGTGGGCATGTATTAATGCAGCA TACCAATTTTTTTAATCACTTCATGCTAAAGAATATACAAAAATTTGGTGTTGAGGGGCC AGGGTTGGAATCTTTCAATAACATTCAGACATTATTAAAGAATGTTATGCTGCGAAGAAC GAAAGTGGAAAGAGCCGACGATTTAGGGTTGCCACCTAGAGTAGTCACGGTCAGAAAGGA TTATTTCAGCGAAGAAGAAAAGGATTTATACAGAAGTTTATACACTGATTCTCAGAGGAA ATATAATTCTTTTGTCGAAAAGGGTGTTGTCTTGAATAACTATGCGAATATTTTTTCCTT GATCACAAGGATGAGGCAGCTGGCCGATCATCCCGACTTGGTTTTGAAGCGTTTTCATGA CGATAATGCAGCGGGCGTTATTGTTTGTCAGCTATGTAATGATGAAGCAGAAGAGCCAAT CGAATCAAAATGTCATCATAAATTTTGCAGGTTGTGCATAAGGGAATATGTTGAATCATA TATTGAATCTAGTGGTTCAAACTTAACCTGTCCAGTTTGTCACATTGGACTAAGTATAGA TTTGTCTCAACCGTCACTGGAGGTAGATTTAGAATCTTTCAAGAAGCAAAGCATAGTCAG TAGACTTAACATGAAAGGTACCTGGAGGTCATCAACTAAAATTGAGGCACTTGTTGAAGA ACTTTATAAACTTAGAAGTCCCGTAAAAACCGTCAAATCTATTGTATTTTCGCAATTTAC TAGTATGTTAGATTTGGTTGAATGGAGATTGAAAAGAGCTGGATTTCAAACTGTTAAATT ACAAGGTAGTATGTCCCCAACGCAAAGAGATCAGACAATCAAATACTTTATGGACAATAT TGAATGTGAGGTTTTCTTGGTTAGTTTGAAAGCTGGTGGTGTGGCATTGAATTTATGTGA AGCTTCTCAGGTTTTTATTTTGGATCCATGGTGGAATCCTAGTGTGGAATGGCAAAGTGG AGATAGAGTGCATAGAATCGGACAGTATAGGCCTGTGAAGATAACTAGATTTTGTATAGA AGATAGTATTGAAGCTAGAATCATTGAGCTGCAAGAAAAGAAAGCAAATATGATTCATGC GACTATCAATCAGGACGAGGCAGCTATTAATAGATTAACACCGGCTGATCTTCAGTTTTT GTTTAATAATTAAAACTCCTTATAGGATATTCATCTTGTGACTAATTAATATCTATAGAC ATTAATGATAATATTATTAAAGTACAAACTTATTATAATTAAAATTTACTAAGCAGCGGA ACTTGAACGAGCGCCAGCACCTGAAGCAACTAATTCTTTTTGTTGCTCAGATATTTTGAT GTTTGGTAGTGCCTTGTCACCGAAATGCTTAGGATGTGGCAAAAAGCCGACAGATTCTAG GAATGAGATATAAATACCAATTTGTTCTGGAGTAGCACCCATTCCTTTCGTTCTATCTTC GTTGGTCCACTCA
>CAGL0K07766g.cds ATGGAGGAAGGTGGATTCATTAGGAGAACAAGGAGCCGTGTTGGTCGTGCTAAGCAGAAG AAAGTCAGCTATGTGGAGGTGAGTAGTAGCGAAGATGAGCAATCTACTCTTACTAGTGTG TCTGGAGGACGGAAGGACTCTAGCGAGAGTACTGTTGTTGGATCAAGTGCTGACGATCCT ATCGATCTTGACTATGAGGAGGAGGAGGATGAAGAGTTTGTCGATGCAGAGGAAGAGGTG GCAAACCATGATGCTGAAGATGATACTGCCGCAGAGATGAGGACTGCTAAAGTGAAAAGG GGAAAGAGAAGTAGAAGATTAAAACCCACTCTGATGGTAGATTTGTCGAAGGTGGAGTTT GATGAGGATGGCCATGCCAGGATGAAGAAAGAAGAGCCTGATAATGCCCTTCCCGATGTA CCAGACGAACCAAATATACCAGAAATAAAGGAAGATGATGAAGATGATCAACCTTTAAGT AAGAAGAGGAAAACGACAGCAAAAAAATCAAGGAAGAAGAAGGAGCCAAAGATCAAGCTT ACCCCTTATCAGAGGACCACACTGAGGTTGTTTGAACACCATCCAGAACTTGCCAATGTT TTCCCTGATCTACAAAATGCTCCTAAATATGAGCCTCATAGAGCACCTCAACCGGCAGAC ATGGGTGTCAAATTACTTCCTTTTCAGTTGGAAGGTTTGCACTGGATGCTTTCACAGGAA GATAGTATATATAACGGCGGAGTTCTTGCTGATGAAATGGGGATGGGTAAGACTATTCAA ACTATTGCTCTACTCATGAATGACAGAAGCAAGAAGCCATCTCTAGTGGTGGCACCAACA GTGGCTCTTATGCAATGGAAGAATGAGATTGAACAACACACAAATGGGGCTCTTTCCACA TATATATATCACGGTGCATCCAGAACTATTAATATTCATGATTTAAAAGACATTGATGTG ATATTAACGACATACTCTGTCCTTGAATCCGTTTTCAGGAAGCAGAACTACGGGTTTAGG AGGAAGAATGGCCTGGTGAAGGAAAAATCGCTACTACATAATATTGATTTTTACAGAGCT ATTCTTGATGAAGCCCATAATATCAAGGATAGAACTAGTAATACTTCTCGAGCCGTCAAC GCTCTTAAGACACAAAAGAGGTGGTGTCTATCCGGTACACCTTTGCAGAACAGAATTGGC GAAATGTATTCATTGATCAGGTTTTTGGATATCAATCCATTCGCGAAATATTTTTGTACA AAATGTGAATGTGCCTCTAAAGAATGGAAATTTAGTGATAATATGCACTGTGATAGTTGT GGGCATGTATTAATGCAGCATACCAATTTTTTTAATCACTTCATGCTAAAGAATATACAA AAATTTGGTGTTGAGGGGCCAGGGTTGGAATCTTTCAATAACATTCAGACATTATTAAAG AATGTTATGCTGCGAAGAACGAAAGTGGAAAGAGCCGACGATTTAGGGTTGCCACCTAGA GTAGTCACGGTCAGAAAGGATTATTTCAGCGAAGAAGAAAAGGATTTATACAGAAGTTTA TACACTGATTCTCAGAGGAAATATAATTCTTTTGTCGAAAAGGGTGTTGTCTTGAATAAC TATGCGAATATTTTTTCCTTGATCACAAGGATGAGGCAGCTGGCCGATCATCCCGACTTG GTTTTGAAGCGTTTTCATGACGATAATGCAGCGGGCGTTATTGTTTGTCAGCTATGTAAT GATGAAGCAGAAGAGCCAATCGAATCAAAATGTCATCATAAATTTTGCAGGTTGTGCATA AGGGAATATGTTGAATCATATATTGAATCTAGTGGTTCAAACTTAACCTGTCCAGTTTGT CACATTGGACTAAGTATAGATTTGTCTCAACCGTCACTGGAGGTAGATTTAGAATCTTTC AAGAAGCAAAGCATAGTCAGTAGACTTAACATGAAAGGTACCTGGAGGTCATCAACTAAA ATTGAGGCACTTGTTGAAGAACTTTATAAACTTAGAAGTCCCGTAAAAACCGTCAAATCT ATTGTATTTTCGCAATTTACTAGTATGTTAGATTTGGTTGAATGGAGATTGAAAAGAGCT GGATTTCAAACTGTTAAATTACAAGGTAGTATGTCCCCAACGCAAAGAGATCAGACAATC AAATACTTTATGGACAATATTGAATGTGAGGTTTTCTTGGTTAGTTTGAAAGCTGGTGGT GTGGCATTGAATTTATGTGAAGCTTCTCAGGTTTTTATTTTGGATCCATGGTGGAATCCT AGTGTGGAATGGCAAAGTGGAGATAGAGTGCATAGAATCGGACAGTATAGGCCTGTGAAG ATAACTAGATTTTGTATAGAAGATAGTATTGAAGCTAGAATCATTGAGCTGCAAGAAAAG AAAGCAAATATGATTCATGCGACTATCAATCAGGACGAGGCAGCTATTAATAGATTAACA CCGGCTGATCTTCAGTTTTTGTTTAATAATTAA
>CAGL0K07766g.aa MEEGGFIRRTRSRVGRAKQKKVSYVEVSSSEDEQSTLTSVSGGRKDSSESTVVGSSADDP IDLDYEEEEDEEFVDAEEEVANHDAEDDTAAEMRTAKVKRGKRSRRLKPTLMVDLSKVEF DEDGHARMKKEEPDNALPDVPDEPNIPEIKEDDEDDQPLSKKRKTTAKKSRKKKEPKIKL TPYQRTTLRLFEHHPELANVFPDLQNAPKYEPHRAPQPADMGVKLLPFQLEGLHWMLSQE DSIYNGGVLADEMGMGKTIQTIALLMNDRSKKPSLVVAPTVALMQWKNEIEQHTNGALST YIYHGASRTINIHDLKDIDVILTTYSVLESVFRKQNYGFRRKNGLVKEKSLLHNIDFYRA ILDEAHNIKDRTSNTSRAVNALKTQKRWCLSGTPLQNRIGEMYSLIRFLDINPFAKYFCT KCECASKEWKFSDNMHCDSCGHVLMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLK NVMLRRTKVERADDLGLPPRVVTVRKDYFSEEEKDLYRSLYTDSQRKYNSFVEKGVVLNN YANIFSLITRMRQLADHPDLVLKRFHDDNAAGVIVCQLCNDEAEEPIESKCHHKFCRLCI REYVESYIESSGSNLTCPVCHIGLSIDLSQPSLEVDLESFKKQSIVSRLNMKGTWRSSTK IEALVEELYKLRSPVKTVKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDQTI KYFMDNIECEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVK ITRFCIEDSIEARIIELQEKKANMIHATINQDEAAINRLTPADLQFLFNN*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/CAGL/CAGL0K07766g