CAGL0I04224g


highly similar to uniprot|P32863 Saccharomyces cerevisiae YGL163c RAD54 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA

Genomic environment map

Element type: CDS
Element length: 2829 nucleotides,
on anti-sense strand of
Cagl0I: complement(369858..372686).
Other names:
CAGL-CDS0529.1
CAGL-IPF5934
Coding sequence: 943 codons.
Database cross references:
EMBL: CR380955
GeneID: 2889074
HOGENOM: Q6FQR2

Computed results  

None available yet

Protein CAGL0I04224p  


highly similar to uniprot|P32863 Saccharomyces cerevisiae YGL163c RAD54

Protein domain map

Protein length: 942 amino acids
Protein family: GL3M4588
Database cross references:
InterPro: IPR000330
InterPro: IPR001650
InterPro: IPR013967
InterPro: IPR014001
InterPro: IPR014021
KEGG: cgr:CAGL0I04224g
PROSITE: PS51192
PROSITE: PS51194
Pfam: PF00176
Pfam: PF00271
Pfam: PF08658
RefSeq: XP_447432.1
SMART: SM00487
SMART: SM00490
UniProtKB/TrEMBL: Q6FQR2
UniprotKB: Q6FQR2_CANGA

Computed results for CAGL0I04224p  

Blastp Genolevures
Blastp Uniprot

Gene Ontology terms  

GO:0005524 ATP binding
GO:0004386 helicase activity
GO:0003677 DNA binding

Sequence data  


Nucleotide sequence    

>CAGL0I04224g.nt
CAAGTTAAAGCCGTAAACAAGTTAAAGCATATACATTACTTCAAATAAATGGGAAACAAG
ACAACAAAGGCATTCCTATCCGTATTCACTGGAGTGATAATAATGTGCTAAAATTGTAGT
TTACTGCACATATGACGTGGTAGATCGCATACTGATGTATGAGTTGCTGCTTTAGTCTGG
TATGTGATTATGAACCGCTTCATGTTTCACCGGTTAGAATAAATGCACACCCTAGCAGCC
GCTTGTTCTTTATATTTTTTGTATTGTAAATTCTGAGATTAGCTAGCATGTCAAAACATC
CTTGTAGTAAAACGGGTAATTAAAACATGTCTACTAATAGTTCTATATTTCTTAGTCTAT
AAATATTTCTTGTATAAAAAAAGTCTGTTTCATAAGAGCATAGTGCAACGCTTTGTATTG
TGTGTGAAACTTTTAGGACGTCAATGTGATAATGGTGGGTTTCAGTTAGTTGATGGATTA
ATATGCTGTGTATTACTACTGTCTTTACTCAATAATCAAGATTGGGAACAACTTCACATA
ATATTTCTGTCTTGTATGTAGTGCTGCAAAACTGATTCACCGAGACAATAGATAAAGCCC
TATTAGTTGCTATATAATCCCAATTGCTAAGTGTTTGACAAGAACCTTTCATCATGTGAA
TGTTATTTTAATGTGCGACACGAAACCAAATTTTCCTTTTTCGTGTCTCAATAACATCAA
TATCGGGTAAATTATAAACATATGAAAATTCTCTCGATTTGCCATGGCATACTGAAAAAG
TATTAATGTATAGCCTACATACAGGATTATAATCTAGATTTGCTTTAGTAATAGTCTTGC
GTTTCTTGAGTGCAGTGGACGACGACTAATCAAAGAATACACACTTCAGTCTTTGAAGCT
TTGCCACTGCAAAGGCTTTTAACAAATATACTCTTCGCAAAAATAATTCGCAAAGACTTT
GGATACAAAGGTAATAGAATTAAAGAAGGCATAATTTCAGATGGCTAGAAGAAGGTTACC
CGATAGACCGCCTAATGGTATTGGTGCGGGAGAAAGACCACGTCTTGTGCCAAGGCCGAT
TAATGTCGATGAGTCAATATCAAAACTAACTAAGCCATTCAAAGTCCCAGTAAAGTCACA
AAGGAGTCAGACAGTTCCGGCTAATTCTGATCTTAGTCGGCAGCGGCAACTGAGACAAAG
ATCTCAAACCGTTTCCTATGCAGGACTGGATGTTGATAGTAAGGATGAGGTTGATGGTAA
AGAAAATATTTACGATGAGTTAGGAGAACGTGTTATCAAAAAAAGAAGAGTTGATGCTCT
GAGCGCTCGTAGATTAATGGAGGATCCAACAAGACTTGACACAATCGAGGTTACATTAAA
AAAGTCCTTTCATGTACCGATTAAGGGCTACGTACAGAGACACAGCCTGCCATTAACGCT
AGGCACTAAAGTGAAGGTGATTCCTGAGCCTAGGCCGTTGCATGATCCCACAGACGAATT
TGCAATTGTACTTTACGATCCCTCCGTTGATGGGGAAATGATTATTCAGGATGATACTGA
GACTGTACAGAATGTACAGAGCTCAGAAGATCAAAATGCCCAAGAAGCAGAGGCAGAAAA
ATCTAAATATAAGCACCCTAAGATATTGTCCAATGGTGTAAAAAATAAAACATTGCAAGA
GCTTTTAGGAAACTCTCCTTTCAATCCAACTGAATCTATGAAAAAGAAGTTTGCTAATGT
TCCAGTCGTTATTGACCCTAAGCTGGCAAAAATCTTAAGACCACATCAAGTTGAAGGTGT
CAAATTTCTTTATCGTTGTGTGACAGGGCTGGTAATGAAAGACTTTCTTGATCAGCAATT
GGCTAGCCAAAGTTCAAATATCAATTTTCTTGAATGCTCTGATGATGATGTATGCAGCAA
AGAAGTATCACCAATTGATGGCGGTGGAGCCCATGACAATAGTGAAGCGAATAATGATGA
GGCAGGTAACGCTATACAGAACGCTAAAAAGAACGTTAAATCAAAAAAGCAGAAAAAGAC
CATTACTAAGAAACAACAAAGTGAGAATGACTTTTTGGAAGCATTAAAAAAGTCGCAATC
AAATAATAGAGGTGCTTATGGTTGTATCATGGCTGATGAAATGGGTCTAGGGAAAACTCT
ACAATGTATTGCTTTGATGTGGACACTTTTGCGTCAGGGACCTCAAGGAAAGCGATTGAT
CAGTAAGTGTATTATTGTATGTCCTTCTTCTCTAGTCAATAACTGGGCTAATGAATTAGT
AAAGTGGCTAGGTCCTAATACACTTTCACCCTTGGCTGTTGATGGAAAAAAATCTTCCTT
AGCCTCTGGTGCCACTAGTGTGGCAGAGGCTATTAAAAACTGGGCGCAGGCGCAAGGAAG
AAACATTGTGAAACCAGTTCTTATAATTTCATATGATACATTGAGGAGAAATGTCAAACA
ATTGCAAAATACTGAAGTTGGTCTATTGCTAGCCGATGAAGGTCATCGTCTGAAGAATGG
AGATTCTTTAACCTTTACAGCTCTTGATAGTATAAACTGTCCTAGAAGAGTCATTCTATC
AGGTACACCCATACAGAACGATTTATCAGAATATTTTGCTCTTTTAAACTTTTCCAATCC
GGGATTGTTAGGCACAAGAAATGAATTTAGAAGAAATTTCGAGATACCGATTCTCAGAAG
TCGTGATGCCGATGCTACGGATAATGATGTGAAGAGTGGTGAACAGAAGCTTCAATTACT
ATCGAACATTGTTTCAAAGTTTATTATCAGGAGAACAAATGATATTTTGTCCAAATATCT
ACCATGTAAATATGAGCATGTGATATTTGTAAATCTAACGCCTTTCCAGAAACAAGTTTA
TAATATGTTGATTAAGTCCAGGGATATTAAAAAGGTTGTTAAAGGGGATGGTGGATCACA
GCCACTAAAGGCGATTGGTGTTCTTAAAAAACTGTGTAATCATCCTGACCTTATAAAATT
AGATGAAGAGTTAGACAATTATAACGACTTGGATATTCCTGACGATTATAGCATCCCGAC
TGGGAAAAGTAGGGATGTTCAAACACAGTTTTCTGGTAAATTTGCAATTTTAGAGCGCTT
TCTTCATAAAATTAAGACAGAATCTGATGATAAAATTGTATTAATTTCTAATTATACTCA
GACTTTGGATTTAATTGAGAGAATGTGTAGAAATCGTCACTACGCATCTGTAAGATTGGA
TGGAACGATGTCTATAAATAAACGTCAGAAATTAGTTGATCGATTCAATGATCCTGAGGG
GCAAGAATTTATATTTTTACTAAGTTCTAAAGCTGGTGGATGTGGTATCAATTTAATTGG
TGCAAATAGATTGATTTTAATGGATCCAGATTGGAATCCTGCAGCCGATCAGCAGGCCTT
GGCGCGTGTATGGAGAGATGGCCAGAAGAAAGATTGTTTTATTTATAGATTCATTTCTAC
CGGTACGATCGAAGAGAAGATATACCAAAGACAGTCTATGAAAATGAGTCTAAGTTCTTG
TGTGGTTGACGCTAAAGAAGATGTTGAGAGATTGTTCAGTGTTGATAATCTAAGACAGCT
TTTTCAGTTCAATGATAAAACTATATGTGATACTCACGAAACTTTTCAATGTAAACGTTG
TAATAAGCACGGGCAACAAATTATGAGGGCAGCTGCTATGTTATATGGTGATGCCACCAC
ATGGAATCACTTGAATCATAAAGCACTGGAGAAAACAAATGATCATCTATTAAAGAATGA
GTTTTATCACAATGATATCAGTTATGCATTTCAATATATATCACATTAGTATTCGTAGAG
TCGGAGAGCATATTTATAGAATTATATTTCTTATTTGAATTTCATGACAATCATTTATTA
GCATTAGATAGCATGTACTAGCATTCGTTTGCACATAGATGGCGTGACTTTTCTTTTGGC
CATTTTGTAATTTTTTTCACATTTGGTAAATACTAACTGCAAGATCCAGCACCAAAATGT
TAATGGAGACCGTTCCCACCCTAAAATTATGAATAAGGAAGACTATAGAAATGATAAAGA
GTAATAGATCTATTATTCGTCATGTTCTTTAACCCATTCTATTACAGAC

Coding sequence    

>CAGL0I04224g.cds
ATGGCTAGAAGAAGGTTACCCGATAGACCGCCTAATGGTATTGGTGCGGGAGAAAGACCA
CGTCTTGTGCCAAGGCCGATTAATGTCGATGAGTCAATATCAAAACTAACTAAGCCATTC
AAAGTCCCAGTAAAGTCACAAAGGAGTCAGACAGTTCCGGCTAATTCTGATCTTAGTCGG
CAGCGGCAACTGAGACAAAGATCTCAAACCGTTTCCTATGCAGGACTGGATGTTGATAGT
AAGGATGAGGTTGATGGTAAAGAAAATATTTACGATGAGTTAGGAGAACGTGTTATCAAA
AAAAGAAGAGTTGATGCTCTGAGCGCTCGTAGATTAATGGAGGATCCAACAAGACTTGAC
ACAATCGAGGTTACATTAAAAAAGTCCTTTCATGTACCGATTAAGGGCTACGTACAGAGA
CACAGCCTGCCATTAACGCTAGGCACTAAAGTGAAGGTGATTCCTGAGCCTAGGCCGTTG
CATGATCCCACAGACGAATTTGCAATTGTACTTTACGATCCCTCCGTTGATGGGGAAATG
ATTATTCAGGATGATACTGAGACTGTACAGAATGTACAGAGCTCAGAAGATCAAAATGCC
CAAGAAGCAGAGGCAGAAAAATCTAAATATAAGCACCCTAAGATATTGTCCAATGGTGTA
AAAAATAAAACATTGCAAGAGCTTTTAGGAAACTCTCCTTTCAATCCAACTGAATCTATG
AAAAAGAAGTTTGCTAATGTTCCAGTCGTTATTGACCCTAAGCTGGCAAAAATCTTAAGA
CCACATCAAGTTGAAGGTGTCAAATTTCTTTATCGTTGTGTGACAGGGCTGGTAATGAAA
GACTTTCTTGATCAGCAATTGGCTAGCCAAAGTTCAAATATCAATTTTCTTGAATGCTCT
GATGATGATGTATGCAGCAAAGAAGTATCACCAATTGATGGCGGTGGAGCCCATGACAAT
AGTGAAGCGAATAATGATGAGGCAGGTAACGCTATACAGAACGCTAAAAAGAACGTTAAA
TCAAAAAAGCAGAAAAAGACCATTACTAAGAAACAACAAAGTGAGAATGACTTTTTGGAA
GCATTAAAAAAGTCGCAATCAAATAATAGAGGTGCTTATGGTTGTATCATGGCTGATGAA
ATGGGTCTAGGGAAAACTCTACAATGTATTGCTTTGATGTGGACACTTTTGCGTCAGGGA
CCTCAAGGAAAGCGATTGATCAGTAAGTGTATTATTGTATGTCCTTCTTCTCTAGTCAAT
AACTGGGCTAATGAATTAGTAAAGTGGCTAGGTCCTAATACACTTTCACCCTTGGCTGTT
GATGGAAAAAAATCTTCCTTAGCCTCTGGTGCCACTAGTGTGGCAGAGGCTATTAAAAAC
TGGGCGCAGGCGCAAGGAAGAAACATTGTGAAACCAGTTCTTATAATTTCATATGATACA
TTGAGGAGAAATGTCAAACAATTGCAAAATACTGAAGTTGGTCTATTGCTAGCCGATGAA
GGTCATCGTCTGAAGAATGGAGATTCTTTAACCTTTACAGCTCTTGATAGTATAAACTGT
CCTAGAAGAGTCATTCTATCAGGTACACCCATACAGAACGATTTATCAGAATATTTTGCT
CTTTTAAACTTTTCCAATCCGGGATTGTTAGGCACAAGAAATGAATTTAGAAGAAATTTC
GAGATACCGATTCTCAGAAGTCGTGATGCCGATGCTACGGATAATGATGTGAAGAGTGGT
GAACAGAAGCTTCAATTACTATCGAACATTGTTTCAAAGTTTATTATCAGGAGAACAAAT
GATATTTTGTCCAAATATCTACCATGTAAATATGAGCATGTGATATTTGTAAATCTAACG
CCTTTCCAGAAACAAGTTTATAATATGTTGATTAAGTCCAGGGATATTAAAAAGGTTGTT
AAAGGGGATGGTGGATCACAGCCACTAAAGGCGATTGGTGTTCTTAAAAAACTGTGTAAT
CATCCTGACCTTATAAAATTAGATGAAGAGTTAGACAATTATAACGACTTGGATATTCCT
GACGATTATAGCATCCCGACTGGGAAAAGTAGGGATGTTCAAACACAGTTTTCTGGTAAA
TTTGCAATTTTAGAGCGCTTTCTTCATAAAATTAAGACAGAATCTGATGATAAAATTGTA
TTAATTTCTAATTATACTCAGACTTTGGATTTAATTGAGAGAATGTGTAGAAATCGTCAC
TACGCATCTGTAAGATTGGATGGAACGATGTCTATAAATAAACGTCAGAAATTAGTTGAT
CGATTCAATGATCCTGAGGGGCAAGAATTTATATTTTTACTAAGTTCTAAAGCTGGTGGA
TGTGGTATCAATTTAATTGGTGCAAATAGATTGATTTTAATGGATCCAGATTGGAATCCT
GCAGCCGATCAGCAGGCCTTGGCGCGTGTATGGAGAGATGGCCAGAAGAAAGATTGTTTT
ATTTATAGATTCATTTCTACCGGTACGATCGAAGAGAAGATATACCAAAGACAGTCTATG
AAAATGAGTCTAAGTTCTTGTGTGGTTGACGCTAAAGAAGATGTTGAGAGATTGTTCAGT
GTTGATAATCTAAGACAGCTTTTTCAGTTCAATGATAAAACTATATGTGATACTCACGAA
ACTTTTCAATGTAAACGTTGTAATAAGCACGGGCAACAAATTATGAGGGCAGCTGCTATG
TTATATGGTGATGCCACCACATGGAATCACTTGAATCATAAAGCACTGGAGAAAACAAAT
GATCATCTATTAAAGAATGAGTTTTATCACAATGATATCAGTTATGCATTTCAATATATA
TCACATTAG

Predicted translation product    

>CAGL0I04224g.aa
MARRRLPDRPPNGIGAGERPRLVPRPINVDESISKLTKPFKVPVKSQRSQTVPANSDLSR
QRQLRQRSQTVSYAGLDVDSKDEVDGKENIYDELGERVIKKRRVDALSARRLMEDPTRLD
TIEVTLKKSFHVPIKGYVQRHSLPLTLGTKVKVIPEPRPLHDPTDEFAIVLYDPSVDGEM
IIQDDTETVQNVQSSEDQNAQEAEAEKSKYKHPKILSNGVKNKTLQELLGNSPFNPTESM
KKKFANVPVVIDPKLAKILRPHQVEGVKFLYRCVTGLVMKDFLDQQLASQSSNINFLECS
DDDVCSKEVSPIDGGGAHDNSEANNDEAGNAIQNAKKNVKSKKQKKTITKKQQSENDFLE
ALKKSQSNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLISKCIIVCPSSLVN
NWANELVKWLGPNTLSPLAVDGKKSSLASGATSVAEAIKNWAQAQGRNIVKPVLIISYDT
LRRNVKQLQNTEVGLLLADEGHRLKNGDSLTFTALDSINCPRRVILSGTPIQNDLSEYFA
LLNFSNPGLLGTRNEFRRNFEIPILRSRDADATDNDVKSGEQKLQLLSNIVSKFIIRRTN
DILSKYLPCKYEHVIFVNLTPFQKQVYNMLIKSRDIKKVVKGDGGSQPLKAIGVLKKLCN
HPDLIKLDEELDNYNDLDIPDDYSIPTGKSRDVQTQFSGKFAILERFLHKIKTESDDKIV
LISNYTQTLDLIERMCRNRHYASVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGG
CGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIYQRQSM
KMSLSSCVVDAKEDVERLFSVDNLRQLFQFNDKTICDTHETFQCKRCNKHGQQIMRAAAM
LYGDATTWNHLNHKALEKTNDHLLKNEFYHNDISYAFQYISH*



Legend and notes  


Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.

Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.

Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.

Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.

Sequences
ColorNucleotide sequence and Coding sequencePredicted translation product
REDstart and stop codonsInitial methionine and sequence end
BLUEcoding sequenceprotein sequence
greynon-coding sequence (upstream, downstream or intron)
greydonor and acceptor splicing sites