HomeCAGL0G05071g
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062w LCB2 Component of serine palmitoyltransferase, responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1698 nucleotides,
on anti-sense strand of
Cagl0G: complement(480906..482603).
Other names:
CAGL-CDS1690.1
CAGL-IPF5676
Coding sequence: 566 codons.
Element length: 1698 nucleotides,
on anti-sense strand of
Cagl0G: complement(480906..482603).
Other names:
CAGL-CDS1690.1
CAGL-IPF5676
Coding sequence: 566 codons.
Database cross references:
EMBL: CR380953
GeneID: 2888433
HOGENOM: Q6FT63
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR380953
GeneID: 2888433
HOGENOM: Q6FT63
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.N1Orthologs: strict determination not possible; homologs must be refined manually
Protein CAGL0G05071p 
highly similar to uniprot|P40970 Saccharomyces cerevisiae YDR062w LCB2 serine C-palmitoyltransferase subunit
Protein domain map
Database cross references:
Gene3D: G3DSA:3.40.640.10
Gene3D: G3DSA:3.90.1150.10
InterPro: IPR001917
InterPro: IPR004839
InterPro: IPR015421
InterPro: IPR015422
KEGG: cgr:CAGL0G05071g
PROSITE: PS00599
Pfam: PF00155
RefSeq: XP_446581.1
UniProtKB/TrEMBL: Q6FT63
UniprotKB: Q6FT63_CANGA
Gene3D: G3DSA:3.40.640.10
Gene3D: G3DSA:3.90.1150.10
InterPro: IPR001917
InterPro: IPR004839
InterPro: IPR015421
InterPro: IPR015422
KEGG: cgr:CAGL0G05071g
PROSITE: PS00599
Pfam: PF00155
RefSeq: XP_446581.1
UniProtKB/TrEMBL: Q6FT63
UniprotKB: Q6FT63_CANGA
Gene Ontology terms
| GO:0030170 | pyridoxal phosphate binding |
| GO:0016769 | transferase activity, transferring nitrogenous groups |
| GO:0009058 | biosynthetic process |
Sequence data
>CAGL0G05071g.nt ACCAGGGGTCATCCAACAACTTCCTCCCCCTTTGGGACAAGCTGGACGATAGCCAGAAGC GCATAGTGAATATGTACATGAACTACTTTGAGCTGGACCTGATCGCGCGCGACAAGACCA TCAACCAGCTCAGTGTCAGTGAGCAGAAACTGGCGCTCCTGGTGAGAAGTCTAGTGAAGA TGCCAGAGATACTGGTCCTAGACGAAGCATTCTCTGGTATGGAAGTCACGCCAATGTTGA AATGCCACGAGTTCCTAGACCACTGGCCCGGCACAGTGCTTGTGGTCGCACACGTCGCGG AAGAGACACCGGCCTGCCACCACTACCTCCGCCTGATCTCCCCAGGCCAGTACGAGATTG GAGACATAGTATGAGCAACAGTACAAAGGCAAAGGCAAAGACAAAGGCAAAGACTATAAA TAAGGTAAGCGTAAGTAATATATACTGTATGTATTGGTATTGGTTAATATCAATGGTCTA GCATCACGTGTAACAACATCACCTAGTTCTGTTCTATAGAATTAATGTTGAGAAATCAAA ATGGAAGAGTCACGTGCACTACGGAACTTTCTGTGGATTTAGATGGGAAAAAAATGGAAA ATGATGAGAGCCATGACATGGATCAAAGAAGTTCTTCGAGAAGATTGTGCAGTCGCAGTC GCAGTTGCAGTGGGAACAAAGCCTCGTCAGCTTCGATTGGATCAAAGGCTTCAGATGATA ACGTACAATGACCAGACCCCCCCCCCCCCAGTGAGAGGCGAAGCTCTAAGAGAATGAGGG AGAGATCATTGGGACGCCAAAGCAAGAGAAAATTTGGTGTTGAAAAAAAAAAGGCGTTAA AGGAAGGAGCCCTAAGCTAGAAAACTGCCAAAAAAAAAAATACAAAAAACACAAGCTGGA AATTCTGAAAAATTGGACAGTCTGAAGTATAAGCTATAACCGATTTTATATCCACATAAG GAACAACCACAGTTCTAGACAGTGATAAAGCCGGTAAAAGATGTCGACGAATGGTAGTAC TGTGAGCGACTACAAGTATGTTCCGCTTATCAAGCACGAGCCGTTGAGCGATGAGCAACA AAAGGAGAACGAGTTTGGTGAGTTGACGTCTGATGCGTATAGGTTTAAAGTACATTCGCG GGAGGGTAAGCCTATCCGGAAGCCTGTGATAGACACGCCTCCTTACTATATCTCTCTGGT CACGTACCTGAACTATTTGATTCTGATTATCCTGGGGCACATCCATGACTTCTTAGGTAT GAGGTTGCAAAGAAACAAGCACTTGGATATCCTTGAGCATGACGGTATGGCGCCATGGTT CTCCAATTTTGACAGTTTTTTCGCCAGGAGAATGAAGATGAGAATCGACGACTGTTTCTC CAGGCCGACCACTGGTGTTCCGGGCAGATTTATCCGCTGCATTACGCGTATCTCCCACAA CTTGAATGAGTACTTCACTTACCCAGGCACCACTTCCATGTGCCTGAACTTGTCCTCGTA CAACTACCTGGGTTTTGCTCAAAGTAAAGGTCAATGCACAGACGCTGCGTTGGAGAGCGT GGATAAGTACGGTATTCATACCGGTGGCTCCCGTACTCAGATCGGTACCACGGATCTGCA CAGACTAACAGAAGAATTGGTCGCCGACTTCGTTGGTAAGGAAGACGCCATGGTGTTCTC GATGGGTTACGGTACAAACGCTAACTTTTTCAACGCGTTCCTGGATCGTAAGTGTCTAGT CATTTCCGATGAATTGAACCACACATCCATTAGAACAGGTGTCAGACTTTCTGGTGCTGC TGTAAGAACATTCAAACACGGTGACATGGAAGGCCTGGAAAAGTTGATCAGAGATCAAAT CGTGCTCGGTCAGCCAAAGACTAACCGCCCTTGGAAGAAGATTTTGATCTGTGTCGAAGG TTTGTTCTCCATGGAAGGTACTATGTGTAATTTACCTGAACTGATTGCCTTGAAAAAGAA GTACAAGTGTTATTTATTCGTTGATGAAGCACATTCTATTGGTGCTATTGGTCCTACTGG ACGTGGTGTCTGCGAGTATTTCGGTGTCAACCCACATGATGTGGATATTTTGATGGGTAC ATTCACCAAGTCATTCGGTGCTGCGGGTGGTTACATCGCTACTGACAAATGGGTTATGGA TAGATTGAGATTGGATCTAACTACCACTAGTTACGCTGAGCCAACCCCAGCCCCAGTCCT AGCTCAAATTGTTTCTTCATTGAGAACCATCAAAGGTGATATATGTCCAGGTGAAGGTAG AGAGAGATTGGAACGTATAGCTTTCAATTCTCGTTACCTGCGTTTGGCTCTATTGAGATT GGGTTTCATTGTCTACGGTATCCCAGACTCACCTGTTATCCCAATGTTACTGTACTGTCC ATCTAAGATGCCTGCCTTTTCCAGAATGATGCTGCAACGTAAGATTGCTGTTGTGGTTGT CGCTTACCCAGCAACTCCATTGATTGAATCCAGAGTTAGGTTCTGTATGTCTGCATCGAT TACAAAGGAAGATATTGACTATCTTCTACGCCATGTCGATGAAGTCGGTGAAAAGCTGAA CCTAAAGCTAAATTCTGGTAAGTCCAGTATCGATGGTAAAGCCCCAAGATGGGATATAGA GGAAGTTATTAGAAGAACACCAGAGGATTGTAAAGACGACAAATACTTTGTTCTTTGATC TGCCCTCTTTAAACTAGTACTGCTCACGCAATTATATGGCGTTAAGCCATTAGAAGAACG TATAAGTTGTTTATTTCAATTCATGAGACGATGTTTTACACCTAAATTTTTATTTTTATT CTCGTATTATTATTAGTATTGTTGTTACCTCTTTTTCGGCACCCCGCACCCCATATTTGC ATACAAGTGGACTTAGAGTAGAACAAGATATCATGAATTAACTATTAGGTACATGCGGTA CTCTTACAACTACAATCGTATACTATTCATGTTATTGATTAAGTTGTTTTTCATATAT
>CAGL0G05071g.cds ATGTCGACGAATGGTAGTACTGTGAGCGACTACAAGTATGTTCCGCTTATCAAGCACGAG CCGTTGAGCGATGAGCAACAAAAGGAGAACGAGTTTGGTGAGTTGACGTCTGATGCGTAT AGGTTTAAAGTACATTCGCGGGAGGGTAAGCCTATCCGGAAGCCTGTGATAGACACGCCT CCTTACTATATCTCTCTGGTCACGTACCTGAACTATTTGATTCTGATTATCCTGGGGCAC ATCCATGACTTCTTAGGTATGAGGTTGCAAAGAAACAAGCACTTGGATATCCTTGAGCAT GACGGTATGGCGCCATGGTTCTCCAATTTTGACAGTTTTTTCGCCAGGAGAATGAAGATG AGAATCGACGACTGTTTCTCCAGGCCGACCACTGGTGTTCCGGGCAGATTTATCCGCTGC ATTACGCGTATCTCCCACAACTTGAATGAGTACTTCACTTACCCAGGCACCACTTCCATG TGCCTGAACTTGTCCTCGTACAACTACCTGGGTTTTGCTCAAAGTAAAGGTCAATGCACA GACGCTGCGTTGGAGAGCGTGGATAAGTACGGTATTCATACCGGTGGCTCCCGTACTCAG ATCGGTACCACGGATCTGCACAGACTAACAGAAGAATTGGTCGCCGACTTCGTTGGTAAG GAAGACGCCATGGTGTTCTCGATGGGTTACGGTACAAACGCTAACTTTTTCAACGCGTTC CTGGATCGTAAGTGTCTAGTCATTTCCGATGAATTGAACCACACATCCATTAGAACAGGT GTCAGACTTTCTGGTGCTGCTGTAAGAACATTCAAACACGGTGACATGGAAGGCCTGGAA AAGTTGATCAGAGATCAAATCGTGCTCGGTCAGCCAAAGACTAACCGCCCTTGGAAGAAG ATTTTGATCTGTGTCGAAGGTTTGTTCTCCATGGAAGGTACTATGTGTAATTTACCTGAA CTGATTGCCTTGAAAAAGAAGTACAAGTGTTATTTATTCGTTGATGAAGCACATTCTATT GGTGCTATTGGTCCTACTGGACGTGGTGTCTGCGAGTATTTCGGTGTCAACCCACATGAT GTGGATATTTTGATGGGTACATTCACCAAGTCATTCGGTGCTGCGGGTGGTTACATCGCT ACTGACAAATGGGTTATGGATAGATTGAGATTGGATCTAACTACCACTAGTTACGCTGAG CCAACCCCAGCCCCAGTCCTAGCTCAAATTGTTTCTTCATTGAGAACCATCAAAGGTGAT ATATGTCCAGGTGAAGGTAGAGAGAGATTGGAACGTATAGCTTTCAATTCTCGTTACCTG CGTTTGGCTCTATTGAGATTGGGTTTCATTGTCTACGGTATCCCAGACTCACCTGTTATC CCAATGTTACTGTACTGTCCATCTAAGATGCCTGCCTTTTCCAGAATGATGCTGCAACGT AAGATTGCTGTTGTGGTTGTCGCTTACCCAGCAACTCCATTGATTGAATCCAGAGTTAGG TTCTGTATGTCTGCATCGATTACAAAGGAAGATATTGACTATCTTCTACGCCATGTCGAT GAAGTCGGTGAAAAGCTGAACCTAAAGCTAAATTCTGGTAAGTCCAGTATCGATGGTAAA GCCCCAAGATGGGATATAGAGGAAGTTATTAGAAGAACACCAGAGGATTGTAAAGACGAC AAATACTTTGTTCTTTGA
>CAGL0G05071g.aa MSTNGSTVSDYKYVPLIKHEPLSDEQQKENEFGELTSDAYRFKVHSREGKPIRKPVIDTP PYYISLVTYLNYLILIILGHIHDFLGMRLQRNKHLDILEHDGMAPWFSNFDSFFARRMKM RIDDCFSRPTTGVPGRFIRCITRISHNLNEYFTYPGTTSMCLNLSSYNYLGFAQSKGQCT DAALESVDKYGIHTGGSRTQIGTTDLHRLTEELVADFVGKEDAMVFSMGYGTNANFFNAF LDRKCLVISDELNHTSIRTGVRLSGAAVRTFKHGDMEGLEKLIRDQIVLGQPKTNRPWKK ILICVEGLFSMEGTMCNLPELIALKKKYKCYLFVDEAHSIGAIGPTGRGVCEYFGVNPHD VDILMGTFTKSFGAAGGYIATDKWVMDRLRLDLTTTSYAEPTPAPVLAQIVSSLRTIKGD ICPGEGRERLERIAFNSRYLRLALLRLGFIVYGIPDSPVIPMLLYCPSKMPAFSRMMLQR KIAVVVVAYPATPLIESRVRFCMSASITKEDIDYLLRHVDEVGEKLNLKLNSGKSSIDGK APRWDIEEVIRRTPEDCKDDKYFVL*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/CAGL/CAGL0G05071p