HomeCAGL0G00440g
similar to uniprot|P25045 Saccharomyces cerevisiae YMR296c LCB1 Component of serine palmitoyltransferase, responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine
Element type: CDS
Element length: 1677 nucleotides,
on sense strand of
Cagl0G: 44599..46275.
Other names:
CAGL-CDS1724.1
CAGL-IPF3924
Coding sequence: 559 codons.
Element length: 1677 nucleotides,
on sense strand of
Cagl0G: 44599..46275.
Other names:
CAGL-CDS1724.1
CAGL-IPF3924
Coding sequence: 559 codons.
Database cross references:
EMBL: CR380953
GeneID: 2888406
HOGENOM: Q6FTR0
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR380953
GeneID: 2888406
HOGENOM: Q6FTR0
Homologs and Orthologs
Homologs in protein families: GL3C0100 GL3C0100.N6Orthologs: strict determination not possible; homologs must be refined manually
Protein CAGL0G00440p 
similar to uniprot|P25045 Saccharomyces cerevisiae YMR296c LCB1 serine C-palmitoyltransferase subunit
Protein domain map
Database cross references:
Gene3D: G3DSA:3.40.640.10
InterPro: IPR004839
InterPro: IPR015421
KEGG: cgr:CAGL0G00440g
Pfam: PF00155
RefSeq: XP_446384.1
UniProtKB/TrEMBL: Q6FTR0
UniprotKB: Q6FTR0_CANGA
Gene3D: G3DSA:3.40.640.10
InterPro: IPR004839
InterPro: IPR015421
KEGG: cgr:CAGL0G00440g
Pfam: PF00155
RefSeq: XP_446384.1
UniProtKB/TrEMBL: Q6FTR0
UniprotKB: Q6FTR0_CANGA
Gene Ontology terms
| GO:0030170 | pyridoxal phosphate binding |
| GO:0016769 | transferase activity, transferring nitrogenous groups |
| GO:0009058 | biosynthetic process |
Sequence data
>CAGL0G00440g.nt AAAACGGGATAATACAAAGGCAAACGGTGATAATAAAGGATCCCAGAATCATTCAGGGAT ATTTGAAGCGGAAGGAGAAACAACGTAAGGATAATCTAAATGTTGATAAATTACTTGAAG AAACGGATACCGATATCCATAACATTGAGGATATAGAGATGCAAAAGAAGATACTTGAAA CTGAACTTGCCAATCTAGAGAAATCGCAGCAACGAAGAGCTCGCCTGAATCTAAAGAAAA GTGAAGGTAAAGTTGGTAAAGGTGCAAAGAACACTTCTAGACGTTGTGCTACTTGTGGCC AAGTAGGCCACATCAGAACAAACAAATCCTGCCCAATGTATTACAGTGATAACGGACCGG GAGGCAGAAATGCACCAGGTGATACTCCTTCGGCAGCAACTCCAGATGTGACAGCTACAC CACCAGCAAATATATAGATTAGCAAAGTCTGTATTTATAGAGGACAATCATATAGCATAG TATTCCTACAACACTGATCCCATTGGGGTTTGACCAATACTGCATATAGTCATAAAAAAC GATACGCGTTAAACGAATTTTTTTTCTTGTTTCTTGGTGAAAAGTGTCAAAGTCGGCGTA GTGATCACGAACTGCTGAAAAATTTCTCGAGAATCAATCAAATAAGGCACTGGTTTAACT GGAATTGGACGTGTTTCGCATTGGAATATATATTTGGAAAGCCATATTGGTGATTTAATA GGTGTCATCAAGCTCTAAAGTTTCATCTGATATTCACATTGATCTGAAGCCGGTGCTTTT GATTGTATTTGCAGATTAATTTTTTTTATCTCTCTGGAGAAATTATCGAATAGGGTGTCG GGAACTAGAAGGTGAATTGTTCCTTTATAAAAGGTAAAGTAGGACTAATCATTGCAAAAA TTATTCACCCTGAAGCAATTTTCTTTCTTCGTGATCTATAAAAGTATTACAGACTTGAGC CAGTTTTCCCAGACATTTCTCAATAAGAAGATATAAAACAATGGATGCTCCAAGAGTCAG CATCTCAAGCGTGCTTCCACAATATGTCCCTGTTCCTGTGTTCCTAAGCACATCATTTGC ATACATTTGTTTCTTTGTTAACGATGTGTCTGCGAAGATTCCAGGTGGTGCTTATGTCAT ATCATATATTAAGAAATCTCATCGTGATGATCCCTATAGAACGGCTATAGAATTGGGTTT GCTGATATATGCACTGGTGTACTATTTTTCGAAACCGCAACATAAAAAAGGATTACAAGC TAGCAAGCCAAACTTATCAGCCCAAGAAGTGGAGGCTATGATTGAAGAATGGGAACCTGA GCCTATGGTTGATGATTCATTGACTGAATTTCAAAATTGGAGACTAGACAAAATCCCAGT CATGAAAGATTCTGGTGTTGAAACTCGTGTCACTTTTACAAGAAGCAATGGCAAAGAAAC TTTTGAGAATGTCCTAAATATGAGTACGAATAACTTCTTACAATTGTCGAAAACTGAAAG AGTAGTTAATACCGCCAAGACCACCATTAAAAATTACGGTGTAGGTGCTTGTGGTCCAGC TGGTTTTTACGGTAATCAAGATGTACATTACCACTTGGAATATGAGTTAGCTAAGTTTTT TGGAACCGATAGTGCTGTACTGTATGGTCAAGATTTTTGTGTTGCAGCCTCTGTTATTCC TGCATTCACAAAACGTGGTGATATATTAGTAGCAGATAACGATGTATCATTAGCGGTTCA AAATGCCTTACAATTAAGCAGATCTACTGTTTACTACTATGAACATAACAACATGGAATC ATTGGAAAACCTTCTAGCCGAACTCACTGAAGCTGAGAAAAAAGATAAGCCACCTGCTAT TCCTAGAAAGTTTATTGTAACTGAAGCAATCTTCACTAATACTGGTGATATTGCACCACT ACCAGAACTAACAAAATTAAAGAGAAAGTATAAGTTTAGGTTATTTGTTGACGAAACCCT CTCCCTTGGTGTCTTGGGTGCTTCAGGTCGTGGCTTACCAGAGCATTTTAACATGGACCG TGCTCGCTCTATTGATATAACCGTTGGCTCTCTTGCAAATGCACTTGGTTCTTCAGGAGG CTTTGTGCTAGGTGATCATGTTATGTCTCAGCATCAACATATTGGTTCCAATGCCTACTG TTTCTCTGCCTCTTTACCAGCTTATACCACTACAACCGCGACAGAAACTCTGAAGATGTT AGCTGAAGATAATTCAGCAGTTCAGAAAGTACACGGACTCAGTCGTCAATTGTTTGATTT CTTCAACAACGATAAAGATCTGATGGCTTATGTACAGGTGAAATCCAGTGTCCACTCCCC TATTTTGCATTTGGAGTTGTTGGATGATTTCAGAATGGACAAGTTCGGTTATAACAAAGA TCAACTTTTCCAAATTGTAAGCTCATTACAAAAAAAATGTATTACAAATAAGTATATTGA GCCATATGAAAACGAAGAGAAGTTCTTACAAGAAATTGTGGATTTTGTATTGGAGAAGTA CAACATTCTCATCACCAGAAACACCATTGTGTTGAAGTCAGAAAGCGTCCCTATTGTGCC CAGCTTAAAAATATCTTGCACAGCCAATATGTCCTCCAGTGAAGTGGAACAAGCATGTCA TGCTGTTAAAGAAGCACTGTTGAATTACTGCAACTAAGATGACGGAGACCATGACACATA AATAATTATGTTTGAAATATAACTAGGGGCATACTAATTTGATTGCATAGAGCTAAGCCG ATGCAATTGAAGCTTTTTTTATAACGGAGAACTTTGTTATGTCATTACGCATCTTATATA CCAATTATTGTATAGTTAATTTATTCATAAAGTAAAATATGCATTGACAAACAATTCGCA TTGAGGAATGGATAAACAGATATAATCTACTGGTTAAGAGTCATTCACCGCTAATAAGCC TGCATAAGTATGACTTAATATAGATTGCCTTATTTTG
>CAGL0G00440g.cds ATGGATGCTCCAAGAGTCAGCATCTCAAGCGTGCTTCCACAATATGTCCCTGTTCCTGTG TTCCTAAGCACATCATTTGCATACATTTGTTTCTTTGTTAACGATGTGTCTGCGAAGATT CCAGGTGGTGCTTATGTCATATCATATATTAAGAAATCTCATCGTGATGATCCCTATAGA ACGGCTATAGAATTGGGTTTGCTGATATATGCACTGGTGTACTATTTTTCGAAACCGCAA CATAAAAAAGGATTACAAGCTAGCAAGCCAAACTTATCAGCCCAAGAAGTGGAGGCTATG ATTGAAGAATGGGAACCTGAGCCTATGGTTGATGATTCATTGACTGAATTTCAAAATTGG AGACTAGACAAAATCCCAGTCATGAAAGATTCTGGTGTTGAAACTCGTGTCACTTTTACA AGAAGCAATGGCAAAGAAACTTTTGAGAATGTCCTAAATATGAGTACGAATAACTTCTTA CAATTGTCGAAAACTGAAAGAGTAGTTAATACCGCCAAGACCACCATTAAAAATTACGGT GTAGGTGCTTGTGGTCCAGCTGGTTTTTACGGTAATCAAGATGTACATTACCACTTGGAA TATGAGTTAGCTAAGTTTTTTGGAACCGATAGTGCTGTACTGTATGGTCAAGATTTTTGT GTTGCAGCCTCTGTTATTCCTGCATTCACAAAACGTGGTGATATATTAGTAGCAGATAAC GATGTATCATTAGCGGTTCAAAATGCCTTACAATTAAGCAGATCTACTGTTTACTACTAT GAACATAACAACATGGAATCATTGGAAAACCTTCTAGCCGAACTCACTGAAGCTGAGAAA AAAGATAAGCCACCTGCTATTCCTAGAAAGTTTATTGTAACTGAAGCAATCTTCACTAAT ACTGGTGATATTGCACCACTACCAGAACTAACAAAATTAAAGAGAAAGTATAAGTTTAGG TTATTTGTTGACGAAACCCTCTCCCTTGGTGTCTTGGGTGCTTCAGGTCGTGGCTTACCA GAGCATTTTAACATGGACCGTGCTCGCTCTATTGATATAACCGTTGGCTCTCTTGCAAAT GCACTTGGTTCTTCAGGAGGCTTTGTGCTAGGTGATCATGTTATGTCTCAGCATCAACAT ATTGGTTCCAATGCCTACTGTTTCTCTGCCTCTTTACCAGCTTATACCACTACAACCGCG ACAGAAACTCTGAAGATGTTAGCTGAAGATAATTCAGCAGTTCAGAAAGTACACGGACTC AGTCGTCAATTGTTTGATTTCTTCAACAACGATAAAGATCTGATGGCTTATGTACAGGTG AAATCCAGTGTCCACTCCCCTATTTTGCATTTGGAGTTGTTGGATGATTTCAGAATGGAC AAGTTCGGTTATAACAAAGATCAACTTTTCCAAATTGTAAGCTCATTACAAAAAAAATGT ATTACAAATAAGTATATTGAGCCATATGAAAACGAAGAGAAGTTCTTACAAGAAATTGTG GATTTTGTATTGGAGAAGTACAACATTCTCATCACCAGAAACACCATTGTGTTGAAGTCA GAAAGCGTCCCTATTGTGCCCAGCTTAAAAATATCTTGCACAGCCAATATGTCCTCCAGT GAAGTGGAACAAGCATGTCATGCTGTTAAAGAAGCACTGTTGAATTACTGCAACTAA
>CAGL0G00440g.aa MDAPRVSISSVLPQYVPVPVFLSTSFAYICFFVNDVSAKIPGGAYVISYIKKSHRDDPYR TAIELGLLIYALVYYFSKPQHKKGLQASKPNLSAQEVEAMIEEWEPEPMVDDSLTEFQNW RLDKIPVMKDSGVETRVTFTRSNGKETFENVLNMSTNNFLQLSKTERVVNTAKTTIKNYG VGACGPAGFYGNQDVHYHLEYELAKFFGTDSAVLYGQDFCVAASVIPAFTKRGDILVADN DVSLAVQNALQLSRSTVYYYEHNNMESLENLLAELTEAEKKDKPPAIPRKFIVTEAIFTN TGDIAPLPELTKLKRKYKFRLFVDETLSLGVLGASGRGLPEHFNMDRARSIDITVGSLAN ALGSSGGFVLGDHVMSQHQHIGSNAYCFSASLPAYTTTTATETLKMLAEDNSAVQKVHGL SRQLFDFFNNDKDLMAYVQVKSSVHSPILHLELLDDFRMDKFGYNKDQLFQIVSSLQKKC ITNKYIEPYENEEKFLQEIVDFVLEKYNILITRNTIVLKSESVPIVPSLKISCTANMSSS EVEQACHAVKEALLNYCN*
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/CAGL/CAGL0G00440p