HomeCAGL0D06270g
similar to uniprot|P53178 Saccharomyces cerevisiae YGL047w ALG13 Catalytic component of UDP-GlcNAc transferase, required for the second step of dolichyl-linked oligosaccharide synthesis
Element type: CDS
Element length: 597 nucleotides,
on anti-sense strand of
Cagl0D: complement(592585..593181).
Other names:
CAGL-CDS4463.1
CAGL-IPF8562
Coding sequence: 199 codons.
Element length: 597 nucleotides,
on anti-sense strand of
Cagl0D: complement(592585..593181).
Other names:
CAGL-CDS4463.1
CAGL-IPF8562
Coding sequence: 199 codons.
Database cross references:
EMBL: CR380950
GeneID: 2886968
HOGENOM: Q6FVR6
Orthologs: strict determination not possible; homologs must be refined manually
EMBL: CR380950
GeneID: 2886968
HOGENOM: Q6FVR6
Homologs and Orthologs
Homologs in protein families: GL3R1263 GL3R1263.N2Orthologs: strict determination not possible; homologs must be refined manually
Protein CAGL0D06270p 
similar to uniprot|P53178 Saccharomyces cerevisiae YGL047w
Protein domain map
Database cross references:
InterPro: IPR007235
KEGG: cgr:CAGL0D06270g
Pfam: PF04101
RefSeq: XP_445678.1
UniProtKB/Swiss-Prot: Q6FVR6
UniprotKB: ALG13_CANGA
InterPro: IPR007235
KEGG: cgr:CAGL0D06270g
Pfam: PF04101
RefSeq: XP_445678.1
UniProtKB/Swiss-Prot: Q6FVR6
UniprotKB: ALG13_CANGA
Gene Ontology terms
None available yet
Sequence data
Nucleotide sequence
>CAGL0D06270g.nt GCACCACTTACTCTGATAAACTTACAGTCTGTGTGGTGGGCGACTGCTCTTGCCAACAAA GTCTTACCAGTACCTGGCGGACCATATAGGATGACACCCTTAGGCTGTGCAATACCCAAA CTCTCAAACAGCTCAGGATGCTTAACTGGAAGCTCAATGACTTCCTTGATCTCCTTGATT TGCTTCGTAAGACCACCGACCATATCATATGTTGAGTCTGGCACTTTCTCTACCATCATC AGCGAGACTAGTGGGTCCGCCTTGTTGACCAGCACCTTGTGCAGCATATAGGAATCACTA CGCAAACACACACGCTGAGAGGCCTTCAGGTCCTTGACATTAATATCCTTCGCCACATCG ACTATATATTTACCCTCAGGCTGCACCTTCACCAGCACCTTCTTGTCAGAGACAACTTTT ATGACCTCACCAACGTACGAGCCCGGCTCCTGCAGCAGACGCAATTCATCCTTGATGAAA CGCACCTCGTCGTTAAGCGCATTCCTCTGGGCTTCCAGTCTCCGCAGGTTTTCTGTCTTC CCCCGGATCTTCAGCTCCGTCTCCTGTATCTTATGCTCAAAGTACGGCTTGATACCGCTC TCATGAACCATACCCTTGCTAATCATATTCGCTATACCGTGTTCTCAGCGCTTTTGCCTT CCCAATTGAGGACGCAATTCTCCCCCAAAGCCCTGCTCTTATAAGTAGACGCCGTGGATC CACTGAGTTGCAGCGCTTTGGGGGGGCCATCAGCCAGCGAGAAACCAAATCGACTTTTTA AGTATGGCGTACTTAATGATATTCTGATTTATTCGCCACATTGAAGAATCGTTGTGTACG CTACACATGTGCTTTTACGTATGTGTGTACAATAATAGAAGGTCCTCGATGATCTTCCGG GAGTAGTCTTGACGACTGGGATTTAAGCAGTAGAAGATTGTGATTATATGAAGGTTGTCG AGTGCGTTCAGTGCAGTGGTTGAGGGGGGCAGTATCAAGAATGAGTGCGTTCGTTACTTG TGGGGCCACGGTGCCGTTTCCCGCGTTGGTTGAGGCTGTTCTGGCGCCAGAATTTGTTGG GTGTTTGTCCCGGGAGGGTTACCGGGTGCTATGTGTCCAGTTTGGCCGTGGGTATGACTT TGAGGCCCAGTTTACGTCGGTGACCTGTACACGTATGCCGTTGGAGAGTGCAGAGGTCAG CGAGCTGAGGCAATTAGTCCGGGATGAGCGAGTGACTGTGATGGGTTACAAAGTGCAAGA TGTCGTGGTGCTGGGCTTCGCGTACTCTAACAATATCCTACAAATCATCGACCGGTACGG GGATGTGGTTATCTCGCATGCGGGCACGGGGTCGATCTTGGACTCGCTCAGGTTGAATAA AAAACTTATAGTGGTAGTTAATCACACACTGATGGATAACCACCAGAAACAGATCGCAGA GAAGTTCCAAAACCTTGGTCATATCTTGGCGACTAATCCTACTGCGATTGAACTATGCGA TGCTATGAAGAGGTTGAAACATGAAGACTTGATACCACTCTCGAGCGAGACCAATACCGA GTTCATGGAGAGATTGAAGAGCATTGCCTACTCATGAATTAAATTAGAAATCTTTGCACA CTTTCCCGAGAAAGGAAGAGCAATAACTTTCTGTCGTTATGTCCTTGACTTATACAATAC TCGGACTTATAACAGTGGTATACGTCACCTTCTCCAGTTACTTTGGGCCTTGTAGCTGTT TTATTACTAAATTACTAAACGGTAGTCATCATGTCATTGTTTACGTTGTGATTATTCTGG CAATAGGTAGCAGACAGTTAACTCAACCTGTTGGATTTGGGCCTTTTCTACTAGCATAGT ATACATGAAACTCCGCTAAATTGTAACCCTATTTATG
Coding sequence
>CAGL0D06270g.cds ATGAGTGCGTTCGTTACTTGTGGGGCCACGGTGCCGTTTCCCGCGTTGGTTGAGGCTGTT CTGGCGCCAGAATTTGTTGGGTGTTTGTCCCGGGAGGGTTACCGGGTGCTATGTGTCCAG TTTGGCCGTGGGTATGACTTTGAGGCCCAGTTTACGTCGGTGACCTGTACACGTATGCCG TTGGAGAGTGCAGAGGTCAGCGAGCTGAGGCAATTAGTCCGGGATGAGCGAGTGACTGTG ATGGGTTACAAAGTGCAAGATGTCGTGGTGCTGGGCTTCGCGTACTCTAACAATATCCTA CAAATCATCGACCGGTACGGGGATGTGGTTATCTCGCATGCGGGCACGGGGTCGATCTTG GACTCGCTCAGGTTGAATAAAAAACTTATAGTGGTAGTTAATCACACACTGATGGATAAC CACCAGAAACAGATCGCAGAGAAGTTCCAAAACCTTGGTCATATCTTGGCGACTAATCCT ACTGCGATTGAACTATGCGATGCTATGAAGAGGTTGAAACATGAAGACTTGATACCACTC TCGAGCGAGACCAATACCGAGTTCATGGAGAGATTGAAGAGCATTGCCTACTCATGA
Legend and notes
Lengths
The length, in codons, of coding sequences includes the stop codon, hence it is one unit longer than the protein length.
Genomic environment map
Click on the symbol of an element or a family to go to its corresponding page. Colors in the lane "protein encoding genes" indicate strandedness: shades of blue for direct orientation, shades of red for reverse orientation. Colors in the lane "protein family" are arbitrarly chosen in such a way that different protein families have different colors in the map.
Protein domain map
Domains are extracted from SwissProt files. Click on the symbol of a domain to extract the domain sequence.
Genemark image and list
Genemark computation of protein-coding potential of DNA was made from 1000 nucleotides upstream the open reading frame to 300 nucleotides downstream. Thus the open reading frame protein-coding potential appears on frame #3.
Sequences
| Color | Nucleotide sequence and Coding sequence | Predicted translation product |
| RED | start and stop codons | Initial methionine and sequence end |
| BLUE | coding sequence | protein sequence |
| grey | non-coding sequence (upstream, downstream or intron) | |
| grey | donor and acceptor splicing sites |
URL: http://www.genolevures.org/elt/CAGL/CAGL0D06270p